Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LQ049_RS10715 Genome accession   NZ_CP088187
Coordinates   2269361..2271175 (-) Length   604 a.a.
NCBI ID   WP_088775368.1    Uniprot ID   -
Organism   Enterococcus hirae strain S46-3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2264361..2276175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ049_RS10690 (LQ049_10695) - 2264437..2265894 (+) 1458 WP_034699920.1 glycoside-pentoside-hexuronide (GPH):cation symporter -
  LQ049_RS10695 (LQ049_10700) - 2265910..2266944 (+) 1035 WP_088775367.1 aldose epimerase family protein -
  LQ049_RS10700 (LQ049_10705) - 2266947..2268134 (+) 1188 WP_010720860.1 galactokinase -
  LQ049_RS10705 (LQ049_10710) - 2268351..2268818 (-) 468 WP_010720861.1 DUF4809 family protein -
  LQ049_RS10710 (LQ049_10715) - 2268815..2268991 (-) 177 WP_155727581.1 hypothetical protein -
  LQ049_RS10715 (LQ049_10720) pepF 2269361..2271175 (-) 1815 WP_088775368.1 oligoendopeptidase F Regulator
  LQ049_RS10720 (LQ049_10725) - 2271299..2272294 (-) 996 WP_205216476.1 competence protein CoiA family protein -
  LQ049_RS10725 (LQ049_10730) - 2272394..2273041 (-) 648 WP_010720865.1 adaptor protein MecA -
  LQ049_RS10730 (LQ049_10735) spxA 2273430..2273828 (-) 399 WP_002296384.1 transcriptional regulator SpxA -
  LQ049_RS10735 (LQ049_10740) - 2274607..2275314 (+) 708 WP_088775370.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69942.32 Da        Isoelectric Point: 4.7590

>NTDB_id=633105 LQ049_RS10715 WP_088775368.1 2269361..2271175(-) (pepF) [Enterococcus hirae strain S46-3]
MSETTQLPKREELPEELTWDLTKIFSSDQEFDEKYQELTEELKNSDQYKGTLAKGATEFLNVLEFVLDVYRKVELIYVYA
HLKNDQDTANTTYQALYARAGSLFSKVSEAVSWYEPEVLQLSDEQIWQYFEQEPKLELYRHYVKQMVDNRAHILSAEQES
LLAGAGEIFGASSDTFAVLNNADLEFPTIVGEDGKKIQLSHGVYGQLMESTDRTVREAAFKGLYRVYDQFKNTFASTLST
HIKGHNYKAKIRHYHSAREASLSNNHIPESVYDTLIEVVNKNLPLLHRYMELRKRLLNVEKLHMYDLYTPVLGEAPIKFT
YEEAKQKALEALAPMGEEYLSVVEKAFADRWIDVVENKGKRSGAYSSGSYDTNPYILMNWHDTLDQLFTLVHEMGHSVHS
YFTRSNQPFVYGDYSIFLAEIASTTNENILTEYLLETEQDPRVRAYVLNHYLDGFKGTIFRQTQFAEFEHFMHEEDAKGV
PLTSEYLSDSYGELNAKYYGSAVEKDPEIKYEWSRIPHFYYNYYVYQYATGFSAASALAQKIWGQEPDALEKYLTYLKSG
NSDYPVEVMKKAGVDMTKADYIESAMTKFEQRLNELEELVEKLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=633105 LQ049_RS10715 WP_088775368.1 2269361..2271175(-) (pepF) [Enterococcus hirae strain S46-3]
ATGAGTGAAACGACCCAATTACCAAAACGAGAAGAATTGCCTGAAGAACTGACTTGGGATCTCACCAAAATCTTTTCTAG
CGATCAAGAATTTGATGAAAAATACCAAGAATTAACAGAAGAATTAAAAAATTCCGATCAATATAAAGGAACATTAGCAA
AGGGTGCGACAGAATTTCTGAATGTGCTTGAATTTGTTTTAGATGTTTACCGAAAAGTGGAACTCATTTATGTCTATGCT
CATTTAAAAAATGACCAAGATACAGCAAATACGACTTATCAAGCTTTATATGCGAGAGCAGGAAGTTTATTTTCTAAAGT
AAGTGAAGCAGTCTCTTGGTATGAACCAGAAGTCCTTCAACTTTCGGATGAGCAGATTTGGCAGTATTTTGAGCAAGAGC
CGAAGTTAGAACTGTATCGTCATTACGTAAAACAAATGGTGGATAATCGTGCGCATATATTATCTGCAGAACAAGAATCA
TTACTAGCTGGAGCAGGAGAAATTTTTGGCGCTTCCAGTGATACATTTGCTGTTTTAAACAATGCCGATCTAGAGTTTCC
TACGATCGTGGGAGAAGATGGGAAAAAAATCCAGCTTTCTCATGGTGTCTATGGTCAATTGATGGAAAGCACAGATCGTA
CAGTTAGAGAAGCTGCATTCAAAGGGCTTTATCGTGTCTATGATCAATTTAAAAATACGTTTGCTTCAACATTGAGTACC
CATATCAAAGGGCACAATTACAAAGCAAAAATTCGCCATTATCATTCTGCTAGAGAAGCTTCTTTGAGCAACAATCATAT
CCCAGAAAGTGTTTATGATACATTGATTGAAGTAGTCAATAAAAATCTTCCGCTATTGCATCGTTATATGGAATTACGCA
AACGTCTTTTAAATGTAGAAAAACTGCATATGTATGATCTATATACACCAGTATTAGGAGAAGCTCCTATCAAGTTCACT
TACGAAGAAGCGAAACAGAAAGCTTTGGAAGCTTTGGCACCAATGGGGGAAGAATATCTGTCAGTGGTAGAAAAAGCTTT
TGCTGACCGTTGGATCGATGTGGTCGAAAATAAAGGGAAACGAAGTGGCGCTTATTCTTCAGGAAGCTATGATACCAATC
CTTATATTTTAATGAACTGGCATGATACGTTGGATCAATTATTTACGCTCGTACATGAAATGGGACATAGTGTGCATAGT
TACTTTACTCGTTCAAATCAACCGTTTGTTTACGGTGATTATTCCATTTTCTTAGCAGAGATTGCTTCAACAACTAATGA
AAATATTTTGACAGAATACTTGCTTGAAACTGAACAAGATCCACGTGTTCGTGCATATGTCTTGAATCATTATCTTGATG
GATTCAAAGGAACGATTTTCAGACAAACACAATTTGCAGAATTTGAGCATTTCATGCATGAAGAAGATGCCAAAGGTGTA
CCTTTGACCAGTGAATATCTAAGCGACAGTTATGGGGAATTGAATGCCAAATATTATGGATCAGCGGTAGAAAAAGATCC
GGAAATCAAATATGAATGGTCTCGTATCCCACATTTCTACTATAATTATTATGTTTATCAATATGCAACAGGATTTTCAG
CTGCCTCTGCTTTGGCGCAGAAAATTTGGGGTCAAGAGCCAGATGCTCTAGAAAAATACCTTACTTATTTGAAATCAGGA
AATAGTGATTACCCAGTTGAAGTCATGAAAAAAGCAGGCGTCGACATGACAAAAGCTGATTATATCGAATCAGCTATGAC
TAAGTTTGAACAACGATTAAATGAATTAGAGGAACTAGTTGAAAAATTGTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.397

98.344

0.555