Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LQK05_RS08260 Genome accession   NZ_CP088157
Coordinates   1682927..1683613 (-) Length   228 a.a.
NCBI ID   WP_072353822.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 199     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1677927..1688613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQK05_RS08240 (LQK05_08240) rpsT 1678841..1679092 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  LQK05_RS08245 (LQK05_08245) holA 1679137..1680111 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  LQK05_RS08250 (LQK05_08250) comEC 1680168..1682369 (-) 2202 WP_172838642.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LQK05_RS08255 (LQK05_08255) - 1682374..1682835 (-) 462 WP_000439693.1 ComE operon protein 2 -
  LQK05_RS08260 (LQK05_08260) comEA 1682927..1683613 (-) 687 WP_072353822.1 ComEA family DNA-binding protein Machinery gene
  LQK05_RS08265 (LQK05_08265) - 1683653..1684369 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  LQK05_RS08270 (LQK05_08270) rsfS 1684372..1684725 (-) 354 WP_001088020.1 ribosome silencing factor -
  LQK05_RS08275 (LQK05_08275) yqeK 1684726..1685310 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LQK05_RS08280 (LQK05_08280) nadD 1685300..1685869 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  LQK05_RS08285 (LQK05_08285) yhbY 1685872..1686162 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  LQK05_RS08290 (LQK05_08290) aroE 1686166..1686972 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  LQK05_RS08295 (LQK05_08295) yqeH 1686986..1688086 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25773.50 Da        Isoelectric Point: 9.6753

>NTDB_id=632986 LQK05_RS08260 WP_072353822.1 1682927..1683613(-) (comEA) [Staphylococcus aureus strain 199]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=632986 LQK05_RS08260 WP_072353822.1 1682927..1683613(-) (comEA) [Staphylococcus aureus strain 199]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

99.561

100

0.996
  comEA Staphylococcus aureus N315

97.807

100

0.978