Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LRM93_RS14120 Genome accession   NZ_CP088142
Coordinates   2857166..2857771 (-) Length   201 a.a.
NCBI ID   WP_001202372.1    Uniprot ID   A0A5Y3LDE2
Organism   Salmonella enterica subsp. enterica serovar Gallinarum strain SCPM-O-B-4548     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2852166..2862771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRM93_RS14105 (LRM93_14100) helD 2852383..2854437 (-) 2055 WP_000420505.1 DNA helicase IV -
  LRM93_RS14110 (LRM93_14105) - 2854561..2855007 (+) 447 WP_001261222.1 YccF domain-containing protein -
  LRM93_RS14115 (LRM93_14110) yccS 2855026..2857179 (+) 2154 WP_000950876.1 YccS family putative transporter -
  LRM93_RS14120 (LRM93_14115) sxy/tfoX 2857166..2857771 (-) 606 WP_001202372.1 TfoX/Sxy family DNA transformation protein Regulator
  LRM93_RS14125 (LRM93_14120) sulA 2857988..2858497 (+) 510 WP_000288733.1 SOS-induced cell division inhibitor SulA -
  LRM93_RS14130 (LRM93_14125) ompA 2858854..2859906 (+) 1053 WP_001674965.1 porin OmpA -
  LRM93_RS14135 (LRM93_14130) matP 2859978..2860430 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  LRM93_RS14140 (LRM93_14135) - 2860616..2862376 (+) 1761 WP_080177874.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23190.98 Da        Isoelectric Point: 8.7403

>NTDB_id=632887 LRM93_RS14120 WP_001202372.1 2857166..2857771(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Gallinarum strain SCPM-O-B-4548]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPLAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=632887 LRM93_RS14120 WP_001202372.1 2857166..2857771(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Gallinarum strain SCPM-O-B-4548]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCTCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y3LDE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746