Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   N5P13_RS15325 Genome accession   NZ_CP104736
Coordinates   3267795..3268319 (-) Length   174 a.a.
NCBI ID   WP_004923726.1    Uniprot ID   Q9AM60
Organism   Acinetobacter baylyi strain JAT2091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3262795..3273319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P13_RS15305 (N5P13_15305) - 3263056..3263907 (-) 852 WP_004923737.1 hypothetical protein -
  N5P13_RS15310 (N5P13_15310) aroB 3263917..3265005 (-) 1089 WP_004923735.1 3-dehydroquinate synthase -
  N5P13_RS15315 (N5P13_15315) aroK 3265027..3265569 (-) 543 WP_004923733.1 shikimate kinase AroK -
  N5P13_RS15320 (N5P13_15320) comQ/pilQ 3265606..3267735 (-) 2130 WP_004923730.1 type IV pilus secretin PilQ Machinery gene
  N5P13_RS15325 (N5P13_15325) comL/pilP 3267795..3268319 (-) 525 WP_004923726.1 pilus assembly protein PilP Machinery gene
  N5P13_RS15330 (N5P13_15330) comO/pilO 3268319..3269056 (-) 738 WP_004923719.1 type 4a pilus biogenesis protein PilO Machinery gene
  N5P13_RS15335 (N5P13_15335) comN/pilN 3269053..3269691 (-) 639 WP_004923716.1 PilN domain-containing protein Machinery gene
  N5P13_RS15340 (N5P13_15340) comM/pilM 3269688..3270749 (-) 1062 WP_004923715.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19429.78 Da        Isoelectric Point: 9.3450

>NTDB_id=632744 N5P13_RS15325 WP_004923726.1 3267795..3268319(-) (comL/pilP) [Acinetobacter baylyi strain JAT2091]
MNNKILWLGLVILGLSGCDSRIDAIHQEMATIRNQPPLPIEPAPVFMPVPSFQYSASQLRNPFLPSSLAAELKIMSGKRV
YPNLARPKQPLESYALESLTMKGSMRKINAQIMALIQTPDNEIERVQVGNYIGLNYGRIIRITPTQIDLMEIVPDGHDGY
IERPRSLVLIGPKP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=632744 N5P13_RS15325 WP_004923726.1 3267795..3268319(-) (comL/pilP) [Acinetobacter baylyi strain JAT2091]
ATGAACAATAAAATTTTGTGGTTGGGTTTAGTTATACTTGGGCTTTCAGGGTGCGACTCCCGTATAGATGCTATTCATCA
GGAGATGGCGACTATTCGTAACCAGCCGCCATTACCTATTGAGCCAGCGCCTGTATTTATGCCTGTACCCAGCTTTCAAT
ATTCTGCAAGCCAGTTGAGAAATCCATTTTTACCAAGTTCATTGGCTGCCGAGCTTAAGATTATGTCGGGTAAACGCGTC
TATCCGAACCTTGCGAGACCGAAACAACCTTTAGAAAGTTACGCACTAGAATCTCTGACCATGAAAGGTAGTATGCGTAA
AATAAATGCACAAATCATGGCATTGATCCAGACACCAGATAATGAAATTGAACGCGTACAGGTCGGCAACTATATAGGGT
TAAATTATGGACGAATTATTCGAATTACCCCTACGCAAATTGATTTAATGGAAATTGTACCAGATGGACATGATGGGTAT
ATCGAACGACCTCGAAGTTTGGTCTTAATTGGGCCTAAGCCTTAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9AM60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

100

100

1
  pilP Acinetobacter baumannii D1279779

71.839

100

0.718