Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LRM31_RS08090 Genome accession   NZ_CP088119
Coordinates   1717265..1717891 (+) Length   208 a.a.
NCBI ID   WP_032637053.1    Uniprot ID   A0AAJ6MNH4
Organism   Enterobacter kobei strain 6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1712265..1722891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRM31_RS08070 (LRM31_08070) - 1712663..1714423 (-) 1761 WP_047028048.1 Lon protease family protein -
  LRM31_RS08075 (LRM31_08075) matP 1714610..1715062 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  LRM31_RS08080 (LRM31_08080) ompA 1715127..1716182 (-) 1056 WP_241449057.1 porin OmpA -
  LRM31_RS08085 (LRM31_08085) sulA 1716538..1717047 (-) 510 WP_014883253.1 SOS-induced cell division inhibitor SulA -
  LRM31_RS08090 (LRM31_08090) sxy/tfoX 1717265..1717891 (+) 627 WP_032637053.1 TfoX/Sxy family DNA transformation protein Regulator
  LRM31_RS08095 (LRM31_08095) yccS 1717848..1720010 (-) 2163 WP_023332614.1 YccS family putative transporter -
  LRM31_RS08100 (LRM31_08100) - 1720030..1720476 (-) 447 WP_014883256.1 YccF domain-containing protein -
  LRM31_RS08105 (LRM31_08105) helD 1720600..1722654 (+) 2055 WP_241449058.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23930.53 Da        Isoelectric Point: 9.0691

>NTDB_id=632718 LRM31_RS08090 WP_032637053.1 1717265..1717891(+) (sxy/tfoX) [Enterobacter kobei strain 6]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAIDDAVFAMVSDGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERCQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARECWLKMRAKN
RALGIKVLFALEGAIEGLHEAALPAGTRRELTEWFNALPEPQKNHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=632718 LRM31_RS08090 WP_032637053.1 1717265..1717891(+) (sxy/tfoX) [Enterobacter kobei strain 6]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCCCAGGAATACCTCTCACCGCTAGGAGAAATTCATCATCGCGCACT
GTTCGGTGGCTATACCCTGGCGATAGATGACGCGGTTTTTGCCATGGTGTCAGATGGCGAGCTGTACCTTCGCGCCTGTG
AAGAAAGCGCGAAATACTGTGTAAAAAATGCCGCCTCTTTTTTGACGCTGATGAAACGAGGCCGCCCGGTACTTCTCAAC
TATTACCGTGTCGATGATGGACTGTGGCAAGACAGGGAACGGCTGCTTCAGCTCTCTTCTTTCGCGCTCAATGCGGCGAG
GAAAGAGCGCTGTCAGCGCCATCAACGAAACCGGCTTAAAGATCTGCCAAACCTGACCTTTCAGCTTGAGGTATTACTTT
TTGAAGCTGGCATTACTAACGAAGAGACGCTGCGGGCACTGGGTGCCAGGGAGTGCTGGTTAAAGATGCGGGCTAAAAAT
AGGGCACTCGGTATTAAAGTGCTCTTCGCCCTTGAGGGGGCTATTGAGGGTTTGCATGAGGCGGCACTCCCGGCAGGCAC
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGAAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.143

97.596

0.558