Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   N5P16_RS15165 Genome accession   NZ_CP104734
Coordinates   3257955..3258326 (-) Length   123 a.a.
NCBI ID   WP_004922371.1    Uniprot ID   Q6FE18
Organism   Acinetobacter baylyi strain JAT2044     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3252955..3263326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS15155 (N5P16_15155) - 3255957..3257390 (-) 1434 WP_004922366.1 hypothetical protein -
  N5P16_RS15160 (N5P16_15160) - 3257433..3257951 (-) 519 WP_004922368.1 chemotaxis protein CheW -
  N5P16_RS15165 (N5P16_15165) pilH 3257955..3258326 (-) 372 WP_004922371.1 response regulator Machinery gene
  N5P16_RS15170 (N5P16_15170) pilG 3258350..3258733 (-) 384 WP_004922374.1 twitching motility response regulator PilG Regulator
  N5P16_RS15175 (N5P16_15175) - 3258986..3259630 (+) 645 WP_004922377.1 hypothetical protein -
  N5P16_RS15180 (N5P16_15180) - 3259687..3260796 (+) 1110 WP_004922380.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13936.77 Da        Isoelectric Point: 4.8836

>NTDB_id=632667 N5P16_RS15165 WP_004922371.1 3257955..3258326(-) (pilH) [Acinetobacter baylyi strain JAT2044]
MARILIVDDSPTETYRFRDILTRHGYQVLEATNGADGVTLAQAEQPDLVLMDVVMPGVNGFQATRQICRGEQTKHIPVVI
VSTKDQATDRIWGKRQGAREYLTKPIDENQLIEVIQQYIHTDD

Nucleotide


Download         Length: 372 bp        

>NTDB_id=632667 N5P16_RS15165 WP_004922371.1 3257955..3258326(-) (pilH) [Acinetobacter baylyi strain JAT2044]
ATGGCACGTATTTTGATTGTTGATGATTCACCAACGGAAACTTATCGTTTTCGTGACATACTGACCAGACATGGCTACCA
AGTGTTAGAGGCGACCAATGGCGCAGATGGGGTAACACTTGCGCAGGCAGAACAGCCTGATTTGGTGCTTATGGATGTGG
TGATGCCAGGTGTAAATGGTTTTCAGGCAACACGTCAGATTTGTCGGGGTGAGCAAACCAAGCATATACCTGTGGTGATT
GTGAGTACCAAAGACCAAGCGACAGATCGTATCTGGGGTAAACGTCAGGGTGCCCGTGAATATCTCACCAAACCCATTGA
TGAAAATCAGCTGATTGAAGTCATCCAGCAATATATTCATACGGATGATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6FE18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.017

98.374

0.374