Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N5P16_RS08135 Genome accession   NZ_CP104734
Coordinates   1754489..1755085 (+) Length   198 a.a.
NCBI ID   WP_004928046.1    Uniprot ID   Q6FA18
Organism   Acinetobacter baylyi strain JAT2044     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1749489..1760085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS08105 (N5P16_08105) - 1750012..1750425 (-) 414 WP_004928066.1 HIT family protein -
  N5P16_RS08110 (N5P16_08110) - 1750451..1750720 (-) 270 WP_004928064.1 YARHG domain-containing protein -
  N5P16_RS08115 (N5P16_08115) - 1750807..1751679 (-) 873 WP_004928061.1 NAD(P)-dependent oxidoreductase -
  N5P16_RS08120 (N5P16_08120) - 1751683..1752777 (-) 1095 WP_026057012.1 alpha/beta fold hydrolase -
  N5P16_RS08125 (N5P16_08125) - 1752921..1754111 (+) 1191 WP_004928053.1 O-succinylhomoserine sulfhydrylase -
  N5P16_RS08130 (N5P16_08130) - 1754146..1754475 (+) 330 WP_004928049.1 YbaB/EbfC family nucleoid-associated protein -
  N5P16_RS08135 (N5P16_08135) recR 1754489..1755085 (+) 597 WP_004928046.1 recombination mediator RecR Machinery gene
  N5P16_RS08140 (N5P16_08140) - 1755328..1756470 (+) 1143 WP_004928042.1 ribonuclease D -
  N5P16_RS08145 (N5P16_08145) - 1756559..1756864 (+) 306 WP_004928039.1 YcgL domain-containing protein -
  N5P16_RS08150 (N5P16_08150) - 1756857..1757243 (+) 387 WP_011182481.1 hypothetical protein -
  N5P16_RS08155 (N5P16_08155) - 1757265..1758116 (+) 852 WP_004928033.1 AAA family ATPase -
  N5P16_RS08160 (N5P16_08160) - 1758129..1759316 (+) 1188 WP_004928029.1 vWA domain-containing protein -
  N5P16_RS08165 (N5P16_08165) - 1759457..1759888 (-) 432 WP_004928026.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21815.97 Da        Isoelectric Point: 6.3759

>NTDB_id=632648 N5P16_RS08135 WP_004928046.1 1754489..1755085(+) (recR) [Acinetobacter baylyi strain JAT2044]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFGLAHALHEASSHIHECKICHSLTENEICDICLSNDRDQHL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSSGEIEEVILATNATVEGQATAHYLLEATK
HLPVHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMKMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=632648 N5P16_RS08135 WP_004928046.1 1754489..1755085(+) (recR) [Acinetobacter baylyi strain JAT2044]
GTGTTTAGTGATCGATTTGAACAACTGGTTCAAGCACTACGTATCTTACCAAGCGTTGGGCCGAAATCGGCTCAACGCAT
GGCGTTACATTTACTCATGAAGAATCGAGAAGGTGCATTTGGCCTTGCGCATGCTCTGCATGAGGCATCTTCACATATTC
ATGAATGCAAGATTTGTCATTCACTGACTGAAAACGAAATTTGTGATATTTGTCTATCCAATGACCGAGATCAGCATTTG
TTATGTGTGGTGGAATCTCCAGCCGATGTCATGGCGATTGAACAAAGTGGTAGCTTTCGCGGTAAGTACCATGTTTTAGG
GGGACATTTATCTCCACTGGATGGAATAGGTCCCGAAGAAATCGGAATTCCTTATTTGATTCAGCGCTTAAGCTCTGGTG
AAATTGAAGAGGTTATTCTAGCGACTAATGCAACTGTAGAAGGACAAGCAACAGCACATTATTTGCTTGAAGCAACCAAA
CATCTTCCAGTACATATGACTCGTATTGCACAGGGTGTTCCACAGGGCGGCGAACTTGAGTATGTAGACAGTCATACCTT
GAGTCAGGCTGTACATAATCGTATGAAAATGAAATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(42-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6FA18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.735

95.455

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

40.816

98.99

0.404