Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   N5P16_RS05300 Genome accession   NZ_CP104734
Coordinates   1139133..1139813 (+) Length   226 a.a.
NCBI ID   WP_004929572.1    Uniprot ID   Q6F8E2
Organism   Acinetobacter baylyi strain JAT2044     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1134133..1144813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS05275 (N5P16_05275) - 1134293..1135150 (-) 858 WP_004929585.1 SPFH domain-containing protein -
  N5P16_RS05280 (N5P16_05280) - 1135160..1135630 (-) 471 WP_004929582.1 NfeD family protein -
  N5P16_RS05285 (N5P16_05285) - 1135729..1136646 (-) 918 WP_011182655.1 patatin-like phospholipase family protein -
  N5P16_RS05290 (N5P16_05290) - 1136712..1137338 (-) 627 WP_026057024.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  N5P16_RS05295 (N5P16_05295) - 1137472..1138719 (+) 1248 WP_004929575.1 MFS transporter -
  N5P16_RS05300 (N5P16_05300) ciaR 1139133..1139813 (+) 681 WP_004929572.1 DNA-binding response regulator PmrA Regulator
  N5P16_RS05305 (N5P16_05305) - 1139825..1141150 (+) 1326 WP_004929571.1 ATP-binding protein -
  N5P16_RS05310 (N5P16_05310) - 1141286..1141981 (-) 696 WP_004929569.1 phosphatase PAP2 family protein -
  N5P16_RS05315 (N5P16_05315) - 1142098..1143285 (-) 1188 WP_004929566.1 ammonium transporter -
  N5P16_RS05320 (N5P16_05320) - 1143676..1144581 (+) 906 WP_004929565.1 AEC family transporter -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25843.70 Da        Isoelectric Point: 5.6348

>NTDB_id=632640 N5P16_RS05300 WP_004929572.1 1139133..1139813(+) (ciaR) [Acinetobacter baylyi strain JAT2044]
MTKILIIEDDFMIAESTITLLKYHQFEVEWVNNGFDGLAHLAKQSFDLVLLDLGLPMMDGMQVLKQIRQKTGVPVLIISA
RDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRRTNSKDASSLQQDQVLSNGEVILNVEKHIATFQGKEIELSNRE
WAILIPLMTHPNKIFSKANLEDKLYDFDSEVTSNTIEVYIHHLRSKLGKNFIRTIRGLGYRLGQTS

Nucleotide


Download         Length: 681 bp        

>NTDB_id=632640 N5P16_RS05300 WP_004929572.1 1139133..1139813(+) (ciaR) [Acinetobacter baylyi strain JAT2044]
ATGACCAAAATATTGATTATTGAAGATGATTTCATGATCGCTGAATCTACCATTACCTTATTGAAATATCATCAATTTGA
GGTGGAATGGGTCAATAATGGATTTGATGGCTTGGCACACCTTGCAAAACAAAGTTTTGATTTGGTATTACTCGATCTTG
GCCTGCCTATGATGGATGGTATGCAGGTACTTAAGCAGATTCGTCAGAAAACTGGCGTACCAGTTTTAATTATTTCAGCA
CGTGATCAACTTGAAAATCGTGTTGAAGGTCTAAATCAGGGCGCAGATGATTATTTAATCAAGCCTTATGAATTTGATGA
ATTACTTGCACGTATTAATGCATTGTTACGCCGTACCAACAGCAAAGATGCATCTTCATTGCAACAAGATCAGGTCTTGA
GCAATGGTGAAGTGATTTTGAATGTTGAAAAACATATTGCAACTTTTCAAGGTAAGGAAATTGAACTTTCTAATCGTGAA
TGGGCGATTCTGATTCCATTGATGACGCACCCCAACAAGATTTTTTCTAAAGCCAATCTTGAAGATAAACTGTACGATTT
TGATAGTGAAGTGACCAGTAATACCATTGAAGTGTATATTCATCACTTGCGCTCGAAGCTAGGCAAAAATTTTATTCGTA
CTATTCGTGGATTAGGCTACCGACTGGGTCAGACATCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6F8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

36.404

100

0.367