Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LPA45_RS09340 Genome accession   NZ_CP088083
Coordinates   2024927..2026288 (-) Length   453 a.a.
NCBI ID   WP_317924485.1    Uniprot ID   -
Organism   Cupriavidus sp. Agwp_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2019927..2031288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPA45_RS09320 (LPA45_09330) - 2020443..2021408 (-) 966 WP_116320596.1 MurR/RpiR family transcriptional regulator -
  LPA45_RS09325 (LPA45_09335) - 2021708..2023639 (+) 1932 WP_317924487.1 ATP-binding cassette domain-containing protein -
  LPA45_RS09330 (LPA45_09340) - 2023706..2024191 (-) 486 WP_116320594.1 disulfide bond formation protein B -
  LPA45_RS09335 (LPA45_09345) - 2024351..2024923 (-) 573 WP_317924486.1 GNAT family N-acetyltransferase -
  LPA45_RS09340 (LPA45_09350) radA 2024927..2026288 (-) 1362 WP_317924485.1 DNA repair protein RadA Machinery gene
  LPA45_RS09345 (LPA45_09355) alr 2026398..2027519 (-) 1122 WP_116320591.1 alanine racemase -
  LPA45_RS09350 (LPA45_09360) lplT 2028155..2029474 (+) 1320 WP_317924483.1 lysophospholipid transporter LplT -
  LPA45_RS09355 (LPA45_09365) - 2029499..2030674 (-) 1176 WP_116320589.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48439.87 Da        Isoelectric Point: 7.2590

>NTDB_id=632621 LPA45_RS09340 WP_317924485.1 2024927..2026288(-) (radA) [Cupriavidus sp. Agwp_2]
MAKTKTVYTCTECGGTTPRWAGQCPHCQQWNTLVETVAETAASKRFQPLAASAMVRKLSEIDAADVPRFSSCIDEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQALANLAGQRRVLYVSGEESGAQIALRAQRLGVESPALGLLAEIQLEKIQATLEA
EKPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSSGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGDTH
SSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSHHEETVPGSCVLVTQEGSRPLLVEIQALVDTAHVPNPRR
LAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEIRP
SPRGQERLKEAAKLGFTLAVIPKANAPRQKIDGLEVIPVERIEQAIDRVRHLE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=632621 LPA45_RS09340 WP_317924485.1 2024927..2026288(-) (radA) [Cupriavidus sp. Agwp_2]
TTGGCCAAGACCAAGACCGTCTACACCTGTACCGAATGCGGCGGTACCACGCCGCGCTGGGCCGGCCAGTGCCCGCATTG
CCAGCAATGGAACACGCTGGTGGAAACGGTGGCCGAGACGGCCGCTTCCAAGCGCTTCCAGCCGCTGGCTGCGTCGGCCA
TGGTGCGCAAGCTGTCGGAGATCGACGCCGCCGACGTGCCGCGCTTTTCCAGCTGCATCGACGAGTTTGACCGCGTGCTG
GGTGGCGGGCTGGTGGCGGGCGGCGTGGTGCTGATCGGCGGCGATCCAGGCATCGGCAAGTCCACGCTGCTGCTGCAGGC
GCTGGCCAACCTGGCCGGACAGCGCCGCGTGCTTTATGTCAGCGGCGAAGAATCGGGCGCGCAGATCGCCTTGCGTGCGC
AGCGGCTCGGCGTGGAGAGCCCGGCGCTGGGGCTGCTGGCCGAAATCCAGCTCGAGAAGATCCAGGCCACGCTCGAAGCC
GAGAAGCCGGAAGTGGCGGTGATCGACTCGATCCAGACGCTGTACTCCGAGGCGCTGACCTCGGCACCGGGCTCGGTCGC
GCAGGTGCGCGAATGCGCGGCGCAGCTGACGCGCATCGCCAAGAGCAGCGGCATCACCATCATCCTGGTCGGCCACGTGA
CCAAGGAAGGCAGCCTGGCCGGGCCGCGCGTGCTGGAGCATATCGTCGACACGGTGCTGTATTTCGAGGGCGATACGCAT
TCCTCGCACCGGCTGATCCGCGCTTTCAAGAACCGTTTTGGCGCGGTCAACGAACTGGGTGTGTTCGCCATGACCGAGCG
CGGGCTGCGTGGCATCAGCAACCCGTCGGCGCTGTTCCTGTCGCACCATGAAGAGACCGTGCCGGGCTCCTGCGTGCTGG
TGACTCAGGAGGGCTCGCGCCCGCTGCTGGTGGAGATCCAGGCACTGGTCGATACCGCGCACGTGCCCAACCCGCGCCGG
CTGGCGGTGGGCCTTGAGCAGAACCGGCTGGCGCTGCTGCTGGCGGTGCTGCACCGGCATGCGGGCATTGCCTGCTTTGA
CCAGGATGTGTTCCTGAATGCGGTGGGCGGGGTCAAGATCACCGAGCCGGCCGCCGACCTGGCGGTGCTGCTGTCGATCC
ATTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGCCTGGTGGTCTTTGGCGAAGTCGGCCTGGCGGGCGAAATCCGTCCC
AGTCCGCGAGGCCAGGAGCGCCTGAAGGAAGCCGCCAAGCTGGGCTTCACGCTGGCCGTGATCCCCAAGGCGAATGCGCC
CAGGCAGAAGATCGACGGCCTTGAAGTGATCCCGGTGGAGCGCATCGAGCAGGCCATCGACCGCGTGCGCCACCTGGAGT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.442

99.779

0.503
  radA Streptococcus mitis SK321

46.476

100

0.466
  radA Streptococcus mitis NCTC 12261

46.256

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.154

100

0.464
  radA Streptococcus pneumoniae R6

46.154

100

0.464
  radA Streptococcus pneumoniae Rx1

46.154

100

0.464
  radA Streptococcus pneumoniae D39

46.154

100

0.464