Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LPA45_RS05410 Genome accession   NZ_CP088083
Coordinates   1159319..1161751 (+) Length   810 a.a.
NCBI ID   WP_317924635.1    Uniprot ID   -
Organism   Cupriavidus sp. Agwp_2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1154319..1166751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPA45_RS05390 (LPA45_05390) - 1155118..1156227 (-) 1110 WP_116317627.1 hypothetical protein -
  LPA45_RS05395 (LPA45_05395) - 1156397..1157647 (+) 1251 WP_116317628.1 lipoprotein-releasing ABC transporter permease subunit -
  LPA45_RS05400 (LPA45_05400) lolD 1157640..1158380 (+) 741 WP_116317629.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  LPA45_RS05405 (LPA45_05405) - 1158396..1159247 (+) 852 WP_317924636.1 TatD family hydrolase -
  LPA45_RS05410 (LPA45_05410) comA 1159319..1161751 (+) 2433 WP_317924635.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LPA45_RS05415 (LPA45_05415) - 1161748..1162698 (-) 951 WP_116317632.1 MurR/RpiR family transcriptional regulator -
  LPA45_RS05420 (LPA45_05420) edd 1162957..1164852 (+) 1896 WP_317924634.1 phosphogluconate dehydratase -
  LPA45_RS05425 (LPA45_05425) - 1165003..1165488 (+) 486 WP_116317634.1 gluconokinase -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 85909.90 Da        Isoelectric Point: 10.3231

>NTDB_id=632617 LPA45_RS05410 WP_317924635.1 1159319..1161751(+) (comA) [Cupriavidus sp. Agwp_2]
MRGFVVAFVAGCWVLQQQATLPRQDAVRMAAAGLALAGIAMLLCGTRLRAARRGPMLALLAFGAAFCWAAWRADIRLREW
LPASLESRDLDVQGVVSGLPSESAGGVRFAFAVEQAVPDGSDEPGLVLPGRLLLHWRDAPPGLYPGQRYALTIRLRRPRG
LANPFGFDYAYWLLAQGYGATGYVRRAQGPPQEVTRERLGWRIEAWRAAVRDHLRAAMPADARYGPVLIALVIGDQRGID
TEDWQLFRRTGISHLVSISGLHITMIAGMAGSLAGMLWRHSFGLGRRLRRPLPLWLPARHAALAAAVASALVYGLLAGMQ
IPALRTVAMLCVAAVAVWGARTPPASVVLAFAALVALLLDPWAVMSPGFWLSFGAVAVIFYAARSERGHAPESRWQRSRA
TLAAAARTQWAVTAGLVPLTLLMFQQVSVVSPLANAVAIPVVSLLVTPLSLAAAAAPAMLAAPLLTVAHQAMVWLAALLG
WFSGLPWAMWEAPGSGPLPLLLAGLGIALLLAPPASAVVPLHGGLLVLPLVLARGPPVAHGEFRAVMLDVGQGTAVLVQT
RAHALLYDAGPGYASGASAGAQVVVPLLRGLGLGRIDHLMVSHEDADHAGGVADVEAAVPVAARSTGAPPDHALLGPAPS
GWAPCAAGQQWEWDGVHFTVLHPLPSQSQQAAIASNARSCVLHVASARHRLLLTGDIGVAEERALIDRLPPEALLADVMV
VAHHGSGTSSGAAWLDAVRPQAAVFQLGYANRYRHPRADVWERYGRAGIARYRADETGAVTLSTAPAGYTLSVFRQAEPR
YWRARAEAPR

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=632617 LPA45_RS05410 WP_317924635.1 1159319..1161751(+) (comA) [Cupriavidus sp. Agwp_2]
GTGCGCGGGTTCGTGGTGGCGTTCGTCGCGGGATGCTGGGTGCTGCAGCAGCAGGCAACGCTGCCGCGGCAGGACGCCGT
GCGCATGGCCGCTGCCGGACTGGCGCTGGCGGGCATCGCCATGCTGCTGTGCGGCACGCGCCTGCGTGCCGCGCGGCGGG
GCCCGATGCTGGCGCTCCTGGCCTTCGGCGCCGCGTTCTGCTGGGCGGCATGGCGCGCCGATATCCGCTTGCGGGAGTGG
TTGCCTGCTTCGCTTGAATCGCGCGACCTCGACGTGCAGGGTGTGGTTTCCGGGTTGCCGTCGGAATCAGCGGGCGGCGT
CCGCTTTGCCTTCGCCGTCGAGCAGGCCGTGCCGGATGGGTCGGACGAACCAGGGTTGGTGTTACCCGGCCGGCTGCTTC
TTCACTGGCGCGACGCGCCGCCTGGCCTGTATCCCGGCCAGCGCTACGCCCTGACCATACGCTTGCGGCGCCCGCGTGGG
CTGGCCAATCCATTCGGCTTCGACTATGCCTACTGGCTGCTGGCGCAGGGCTATGGCGCGACGGGCTATGTACGGCGCGC
ACAGGGGCCACCGCAGGAGGTCACGCGGGAGCGGCTTGGATGGCGCATCGAGGCATGGCGCGCGGCGGTGCGCGATCACC
TGCGCGCGGCGATGCCGGCCGATGCGCGCTATGGCCCCGTGCTGATCGCGCTGGTGATCGGCGACCAGCGCGGCATCGAT
ACGGAAGACTGGCAGTTGTTCCGGCGTACCGGCATCAGCCACCTGGTCAGTATTTCAGGTTTGCACATCACCATGATTGC
CGGCATGGCGGGGTCGCTCGCGGGCATGTTATGGCGGCATTCATTCGGCCTGGGGCGCAGGCTGCGCCGGCCATTGCCGC
TATGGCTCCCGGCCAGGCACGCGGCGCTGGCGGCGGCGGTGGCCAGCGCGCTGGTGTATGGGCTGCTGGCTGGCATGCAG
ATCCCGGCATTGCGCACCGTGGCGATGCTGTGCGTGGCTGCGGTGGCGGTTTGGGGCGCGCGGACGCCGCCGGCCTCGGT
GGTGCTGGCCTTCGCTGCGCTGGTGGCGTTGCTGCTGGATCCATGGGCCGTGATGTCGCCGGGCTTCTGGCTGTCGTTCG
GCGCGGTGGCGGTGATCTTCTATGCTGCCCGGTCCGAACGCGGCCATGCGCCGGAAAGCCGCTGGCAACGCTCGCGTGCT
ACGCTTGCCGCCGCTGCGCGCACGCAATGGGCGGTGACAGCCGGACTGGTGCCGCTGACGCTGCTGATGTTCCAGCAGGT
GTCGGTGGTGTCGCCACTGGCCAATGCGGTCGCCATCCCGGTGGTCAGCCTGCTGGTGACGCCGCTGTCGCTGGCGGCCG
CCGCCGCGCCGGCGATGCTGGCCGCGCCGTTGCTGACCGTCGCGCACCAGGCGATGGTGTGGCTGGCGGCCCTGCTGGGC
TGGTTTTCCGGCCTGCCTTGGGCCATGTGGGAAGCGCCGGGCTCGGGCCCATTGCCTTTGCTGCTGGCCGGGCTCGGGAT
TGCGCTGTTGCTGGCGCCGCCGGCCAGCGCCGTGGTGCCCCTGCACGGCGGCCTGCTGGTGTTGCCGCTGGTATTGGCGC
GCGGGCCGCCGGTGGCGCACGGCGAGTTCCGCGCGGTGATGCTCGATGTGGGACAGGGAACCGCGGTGCTGGTGCAGACG
CGCGCGCATGCGCTGCTTTACGACGCGGGGCCTGGCTACGCATCGGGCGCCAGCGCCGGCGCGCAGGTAGTGGTGCCGCT
ACTGCGTGGCCTGGGTCTTGGCCGGATCGACCATCTGATGGTCAGCCATGAAGACGCCGACCATGCCGGCGGGGTGGCGG
ATGTGGAAGCGGCGGTGCCCGTAGCGGCGCGCAGTACCGGCGCGCCACCGGATCATGCCTTGCTCGGGCCGGCGCCATCC
GGCTGGGCGCCGTGCGCGGCCGGGCAGCAATGGGAATGGGACGGCGTGCATTTCACGGTGCTGCATCCGCTGCCATCGCA
ATCGCAACAGGCGGCGATCGCCAGCAATGCCCGCAGCTGCGTGCTGCACGTGGCGTCCGCGCGCCATCGCCTGCTGCTGA
CAGGCGATATTGGCGTGGCCGAGGAACGCGCGCTGATCGATAGGTTGCCGCCGGAGGCGCTGCTTGCCGACGTCATGGTG
GTGGCGCACCACGGCAGCGGCACGTCGTCCGGCGCCGCCTGGCTGGACGCAGTGCGGCCCCAGGCGGCGGTATTCCAGCT
GGGCTATGCCAACCGGTACCGCCATCCGCGTGCCGATGTGTGGGAGCGCTACGGGCGCGCCGGCATCGCGCGCTACCGTG
CAGACGAAACCGGCGCGGTGACCTTGTCCACCGCGCCGGCGGGCTACACGCTGTCGGTCTTCCGGCAGGCCGAGCCGCGC
TACTGGCGCGCCCGGGCGGAGGCGCCGCGCTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(31-187)

Competence protein (Competence)

(231-512)

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-744)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

46.776

100

0.493