Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LRM40_RS13960 Genome accession   NZ_CP088081
Coordinates   3009673..3010764 (-) Length   363 a.a.
NCBI ID   WP_151122022.1    Uniprot ID   A0A643FHT6
Organism   Ideonella dechloratans strain CCUG 30977     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3004673..3015764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRM40_RS21485 - 3005270..3007087 (-) 1818 WP_310734144.1 ATP-binding protein -
  LRM40_RS13945 (LRM40_13945) - 3007084..3007329 (-) 246 WP_151122019.1 PP0621 family protein -
  LRM40_RS13950 (LRM40_13950) - 3007338..3008147 (-) 810 WP_151122020.1 inner membrane protein YpjD -
  LRM40_RS13955 (LRM40_13955) ffh 3008211..3009602 (+) 1392 WP_151122021.1 signal recognition particle protein -
  LRM40_RS13960 (LRM40_13960) pilA 3009673..3010764 (-) 1092 WP_151122022.1 signal recognition particle-docking protein FtsY Machinery gene
  LRM40_RS13965 (LRM40_13965) - 3010933..3012843 (+) 1911 WP_170288757.1 response regulator -
  LRM40_RS13970 (LRM40_13970) - 3012840..3013760 (+) 921 WP_151122024.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 37760.48 Da        Isoelectric Point: 6.0592

>NTDB_id=632604 LRM40_RS13960 WP_151122022.1 3009673..3010764(-) (pilA) [Ideonella dechloratans strain CCUG 30977]
MFSFFRKKAAPPPPVAEAPPSAVPLPPPSEPVAEVAPAVPQAPGEPVVAVAAPAPAPATRQGWLSRLKAGLARTGSSIAQ
VFTGTQIDDTLYEELESALLMADAGVKATEHLLADLKRRVKEAKATDPAQVKGLLVDAVADLLAPLEAALTIGRHPTTVM
MVVGVNGAGKTTSIGKLTRYLAEHDAKVLLAAADTFRAAAREQLSVWAGRNQVEIVSQEGGDPAAVSFDAVNAGRARGCD
VVIADTAGRLPTQLHLMEELKKIKRVITKADAGAPHEVLLVVDGNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGVL
AAIALWARERAAGPVPVYFIGVGEKLEDLQTFSAREFAQALLD

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=632604 LRM40_RS13960 WP_151122022.1 3009673..3010764(-) (pilA) [Ideonella dechloratans strain CCUG 30977]
ATGTTCAGTTTCTTCCGCAAGAAGGCCGCGCCGCCTCCGCCCGTTGCCGAGGCGCCGCCATCGGCCGTGCCGCTGCCGCC
GCCATCCGAGCCAGTCGCCGAGGTCGCGCCGGCCGTGCCGCAGGCACCCGGTGAGCCGGTCGTGGCCGTGGCCGCCCCGG
CCCCGGCGCCTGCCACCCGTCAGGGCTGGCTGTCCCGCCTGAAGGCCGGACTGGCCCGCACCGGCTCCAGCATCGCCCAG
GTCTTCACCGGCACGCAGATCGACGACACGCTCTACGAGGAGCTGGAGTCGGCTCTGCTGATGGCCGATGCCGGCGTGAA
GGCCACCGAGCATCTGCTGGCCGACCTCAAGCGCCGGGTCAAGGAGGCCAAGGCCACCGATCCCGCCCAGGTCAAGGGCC
TGCTGGTGGACGCCGTGGCCGATCTGCTGGCGCCGCTGGAGGCGGCGCTGACCATCGGTCGCCACCCGACCACGGTGATG
ATGGTGGTGGGCGTCAACGGCGCGGGCAAGACCACCAGCATCGGCAAGCTCACCCGCTACCTGGCCGAGCACGACGCCAA
GGTGCTGCTGGCCGCCGCCGACACCTTCCGCGCTGCGGCGCGCGAGCAGCTGTCGGTCTGGGCCGGCCGCAACCAGGTCG
AGATCGTCTCGCAGGAGGGCGGAGACCCGGCCGCGGTGAGCTTCGATGCGGTCAACGCCGGCCGCGCCCGCGGCTGCGAC
GTGGTGATCGCCGACACCGCCGGCCGCCTGCCCACGCAGCTCCACCTGATGGAGGAGCTCAAGAAGATCAAGCGCGTGAT
CACCAAGGCCGATGCCGGCGCCCCGCACGAGGTGCTGTTGGTGGTGGACGGCAACACCGGCCAGAACGCGCTGGCGCAGG
TCAAGGCTTTTGACGACGCCCTGGGCCTGACCGGCCTGGTGGTGACCAAGCTGGACGGCACCGCCAAAGGCGGCGTGCTG
GCGGCCATCGCGCTGTGGGCGCGCGAGCGCGCGGCCGGCCCGGTGCCGGTCTATTTCATCGGTGTGGGGGAGAAGCTCGA
AGACCTGCAGACCTTCAGCGCCCGCGAGTTTGCGCAGGCCCTGCTGGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(75-138)

SRP54-type protein, GTPase domain (SRP54)

(158-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A643FHT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

54.469

98.623

0.537