Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LRM40_RS02040 Genome accession   NZ_CP088081
Coordinates   428651..430171 (+) Length   506 a.a.
NCBI ID   WP_151124095.1    Uniprot ID   A0A643FC12
Organism   Ideonella dechloratans strain CCUG 30977     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 423651..435171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRM40_RS02025 (LRM40_02030) gshA 424874..426169 (-) 1296 WP_151124093.1 glutamate--cysteine ligase -
  LRM40_RS02030 (LRM40_02035) - 426336..427862 (-) 1527 WP_151124094.1 ammonium transporter -
  LRM40_RS02035 (LRM40_02040) - 427900..428238 (-) 339 WP_022979924.1 P-II family nitrogen regulator -
  LRM40_RS02040 (LRM40_02045) comM 428651..430171 (+) 1521 WP_151124095.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LRM40_RS02045 (LRM40_02050) - 430243..431307 (+) 1065 WP_151124096.1 glycosyltransferase family 4 protein -
  LRM40_RS02050 (LRM40_02055) - 431307..432236 (+) 930 WP_151124097.1 hypothetical protein -
  LRM40_RS02055 (LRM40_02060) - 432339..434990 (+) 2652 WP_151124098.1 glycosyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 52656.57 Da        Isoelectric Point: 8.2774

>NTDB_id=632596 LRM40_RS02040 WP_151124095.1 428651..430171(+) (comM) [Ideonella dechloratans strain CCUG 30977]
MSYAVVASRALDGVQAPAVMVEVHLANGLPSFTLVGLADTEVKEARERVRAALAQSGFEFPHNRRITVNLAPADLPKESA
RFDLPMALGILAAQGIIDPQRLAGWEFAGELSLAGALRPVTGAVALALGARKEGACRGLVLPADSAALAARVPGLEVRSA
SHLGEVVQSLLPQGEPLPVARPAAPRARPQALDLADVRGQMAARRALEIAAAGGHSLLLVGPPGSGKSMLAQRLPGLLPP
MSEEEALESAALQGLGAGGLEVDPGCTRPVRAPHHSASSAALVGGGSPPRPGEISLAHGGVLFLDELPEFARSALEALRE
PLESGHITISRAARQARFPARFQLVAAMNPCPCGWLGAQAVTGRACRCAPDTVARYQARISGPLLDRIDMQVEVPAARPD
ELLNGPVGESTAAVVARVRPVQTLQQTRQGGPNAGLAGEALEANAPLAPAARQFLQNAAQQLGWSGRSLHRVLKVARTIA
DLAARDVIDVVHVAEAMQYRRVIQGV

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=632596 LRM40_RS02040 WP_151124095.1 428651..430171(+) (comM) [Ideonella dechloratans strain CCUG 30977]
ATGTCGTATGCGGTGGTGGCCAGTCGGGCCCTGGACGGGGTGCAGGCGCCTGCGGTGATGGTGGAGGTGCATCTGGCCAA
TGGTCTGCCCAGCTTCACCCTGGTGGGGCTGGCGGACACCGAGGTCAAGGAAGCCCGGGAGCGCGTGCGCGCGGCCCTGG
CCCAAAGCGGCTTCGAGTTTCCGCACAACCGGCGCATCACGGTGAATCTGGCGCCGGCCGATCTGCCCAAGGAGTCGGCG
CGCTTCGATCTGCCGATGGCCCTGGGCATCCTGGCGGCCCAGGGCATCATCGACCCGCAGCGGCTGGCGGGCTGGGAGTT
CGCCGGCGAGTTGTCGCTCGCCGGGGCACTGCGCCCGGTCACCGGCGCTGTGGCCCTGGCCTTGGGGGCTCGGAAGGAGG
GGGCCTGCCGCGGCCTGGTGCTTCCGGCCGACAGTGCTGCGCTGGCGGCGCGCGTGCCCGGGCTGGAGGTGCGTTCGGCC
AGCCATCTGGGCGAGGTGGTGCAGTCCCTGCTGCCTCAGGGCGAGCCGCTTCCCGTGGCGCGGCCGGCGGCTCCCCGGGC
CCGCCCCCAGGCGCTGGACCTGGCCGATGTCCGGGGGCAGATGGCGGCTCGCCGGGCGCTGGAGATCGCGGCCGCCGGCG
GTCACAGCCTGCTCCTCGTCGGCCCGCCCGGCTCGGGCAAGTCCATGCTGGCCCAGCGCCTGCCGGGCCTGCTGCCGCCG
ATGTCCGAGGAGGAAGCCCTGGAAAGCGCGGCCCTGCAGGGCTTGGGGGCCGGCGGTCTGGAGGTCGATCCGGGCTGCAC
CCGACCGGTGCGTGCGCCCCATCATAGTGCGAGCTCGGCGGCCCTGGTGGGCGGTGGCAGCCCCCCGCGGCCGGGCGAGA
TCTCCCTGGCGCATGGTGGTGTGCTGTTCCTGGACGAACTGCCGGAGTTCGCACGTTCCGCCCTGGAGGCCTTGCGCGAG
CCACTGGAGAGCGGCCACATCACCATCTCGCGCGCGGCACGCCAGGCCCGCTTCCCGGCGCGCTTCCAGCTGGTTGCCGC
CATGAACCCCTGCCCCTGCGGCTGGCTGGGCGCGCAGGCGGTGACGGGACGGGCCTGTCGCTGCGCCCCGGACACCGTGG
CCCGCTACCAGGCCCGCATCTCGGGGCCCCTGCTGGACCGCATCGACATGCAGGTGGAGGTCCCCGCCGCCCGGCCGGAC
GAATTGCTCAACGGTCCGGTGGGCGAGTCCACCGCCGCGGTGGTGGCCAGGGTGCGGCCGGTCCAGACGCTGCAGCAGAC
CCGGCAGGGCGGGCCCAATGCCGGACTGGCCGGCGAGGCCCTGGAGGCGAATGCGCCGCTGGCGCCCGCGGCGCGCCAGT
TCCTGCAGAACGCGGCGCAGCAGCTGGGCTGGTCCGGACGCAGCCTCCACCGGGTGCTGAAGGTGGCGCGCACGATCGCC
GATCTGGCGGCCCGGGACGTGATCGATGTGGTCCATGTGGCCGAAGCCATGCAGTACCGCCGGGTGATCCAGGGGGTCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)

Subunit ChlI of Mg-chelatase (ChlI)

(21-144)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A643FC12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.096

99.012

0.516
  comM Vibrio campbellii strain DS40M4

51.992

99.209

0.516
  comM Haemophilus influenzae Rd KW20

50.588

100

0.51
  comM Glaesserella parasuis strain SC1401

49.802

100

0.498
  comM Legionella pneumophila str. Paris

48.33

100

0.486
  comM Legionella pneumophila strain ERS1305867

48.33

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.126

100

0.423