Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N5O92_RS16950 Genome accession   NZ_CP104721
Coordinates   3519418..3520023 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ECO3183     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3514418..3525023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O92_RS16930 (N5O92_16930) aes 3514455..3515414 (+) 960 WP_000801813.1 acetyl esterase -
  N5O92_RS16935 (N5O92_16935) hemH 3515411..3516373 (-) 963 WP_001250103.1 ferrochelatase -
  N5O92_RS16940 (N5O92_16940) adk 3516609..3517253 (-) 645 WP_001220233.1 adenylate kinase -
  N5O92_RS16945 (N5O92_16945) htpG 3517434..3519308 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  N5O92_RS16950 (N5O92_16950) recR 3519418..3520023 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  N5O92_RS16955 (N5O92_16955) ybaB 3520023..3520352 (-) 330 WP_072647957.1 YbaB/EbfC family nucleoid-associated protein -
  N5O92_RS16960 (N5O92_16960) dnaX 3520405..3522336 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  N5O92_RS16965 (N5O92_16965) apt 3522465..3523016 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  N5O92_RS16970 (N5O92_16970) ybaN 3523169..3523546 (-) 378 WP_001188905.1 DUF454 family protein -
  N5O92_RS16975 (N5O92_16975) priC 3523616..3524143 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  N5O92_RS16980 (N5O92_16980) rsmS 3524157..3524318 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=632576 N5O92_RS16950 WP_001195025.1 3519418..3520023(-) (recR) [Escherichia coli strain ECO3183]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=632576 N5O92_RS16950 WP_001195025.1 3519418..3520023(-) (recR) [Escherichia coli strain ECO3183]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443