Detailed information NTG0632545

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: AWB56_RS04230
• Genome accession: NZ_CP088073
• Coordinates: 906509..907612 (-)
• Length: 367 a.a.
• NCBI ID: WP_004918085.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer strain RCAD0122
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 901509..912612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AWB56_RS04205 (AWB56_004205)	comF	902704..903357 (-)	654	WP_004918078.1	ComF family protein	Machinery gene
AWB56_RS04215 (AWB56_004215)	-	903579..904130 (-)	552	WP_004918080.1	hypothetical protein	-
AWB56_RS04220 (AWB56_004220)	-	904185..904835 (-)	651	WP_004918082.1	HD domain-containing protein	-
AWB56_RS04225 (AWB56_004225)	gdhA	904967..906325 (-)	1359	WP_014938006.1	NADP-specific glutamate dehydrogenase	-
AWB56_RS04230 (AWB56_004230)	dprA	906509..907612 (-)	1104	WP_004918085.1	DNA-processing protein DprA	Machinery gene
AWB56_RS04235 (AWB56_004235)	-	907615..907992 (-)	378	WP_004918086.1	group III truncated hemoglobin	-
AWB56_RS04240 (AWB56_004240)	ruvC	908003..908557 (-)	555	WP_004918088.1	crossover junction endodeoxyribonuclease RuvC	-
AWB56_RS04245 (AWB56_004245)	-	908581..909771 (-)	1191	WP_004918090.1	carboxypeptidase-like regulatory domain-containing protein	-
AWB56_RS04250 (AWB56_004250)	-	909801..910274 (-)	474	WP_004918092.1	Lrp/AsnC family transcriptional regulator	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 40491.51 Da
• Isoelectric Point: 6.6968

>NTDB_id=632545 AWB56_RS04230 WP_004918085.1 906509..907612(-) (dprA) [Riemerella anatipestifer strain RCAD0122]
MVNAEEILYSIALRRSPLVGDVIFASLVSEVGSAKEAWGLSKLELRKISGVGKQIASNIGDKNLLKFAEKEIEFCIKNEI
KIHLRHLNQLPRLLGECYDAPAILFQKGDYEDTANNISIVGTRNATAYGKSFLEDLIVQFKNKNIQVISGLALGTDGIAH
QEALKNNIKTSAVLAHGLHIIYPSKHKILAEEILNNGGALFSEFCSDEKPDREHFLQRNRIVAGLSANTIVVESAYAGGS
ISTASFANQYNREVYALAGRLTDKYSQGCNHLIFQNKAKIISSIKGLLKDLDLDNTSKVLELFPSVEVSLTPVQEPVYDI
IKEVNDISLDDLSEKLNQPISKVFPVLLELELLGLIRANSGRRYSII

Nucleotide

• Length: 1104 bp

>NTDB_id=632545 AWB56_RS04230 WP_004918085.1 906509..907612(-) (dprA) [Riemerella anatipestifer strain RCAD0122]
ATGGTAAATGCGGAAGAAATTTTATATTCTATTGCTCTTCGGCGAAGCCCATTGGTGGGAGATGTTATATTTGCAAGTTT
GGTTAGCGAGGTAGGCTCTGCTAAGGAAGCGTGGGGTCTGTCTAAGTTGGAATTACGGAAAATATCAGGCGTAGGTAAGC
AAATTGCCTCAAACATCGGAGATAAAAATCTTTTAAAATTTGCTGAAAAGGAAATAGAGTTCTGCATTAAAAACGAAATA
AAAATCCACTTACGACATCTTAATCAGCTTCCTCGTCTTTTAGGTGAATGTTATGATGCTCCTGCTATTCTTTTTCAAAA
AGGAGATTATGAGGATACCGCTAATAATATTAGTATTGTTGGGACGAGAAATGCCACTGCTTATGGTAAGTCGTTTTTGG
AGGATTTAATTGTTCAGTTTAAAAATAAAAATATTCAAGTCATTAGTGGTTTAGCTTTAGGTACAGACGGAATAGCTCAT
CAAGAGGCTTTAAAAAACAATATAAAAACTTCAGCGGTTTTAGCACACGGTTTACATATCATTTATCCGTCCAAACATAA
AATTCTCGCTGAAGAAATATTAAATAATGGTGGAGCTTTGTTTTCTGAATTCTGCTCTGATGAAAAGCCAGATAGAGAAC
ATTTTTTGCAAAGAAATCGTATTGTGGCAGGGCTTTCGGCTAATACGATTGTGGTAGAGTCTGCTTATGCAGGAGGCTCT
ATTAGCACGGCGAGTTTTGCTAATCAGTATAATAGAGAAGTGTATGCTTTGGCAGGGCGTCTTACAGATAAATATAGCCA
AGGTTGCAATCATCTTATTTTTCAAAATAAAGCTAAAATCATATCTTCTATTAAAGGTTTGCTAAAAGACCTAGATTTGG
ATAATACTTCTAAAGTTTTGGAGCTTTTTCCTTCAGTTGAAGTTTCTTTAACTCCTGTTCAGGAGCCTGTTTATGATATT
ATTAAGGAGGTTAATGATATTTCATTAGATGACTTGTCAGAAAAATTAAATCAACCCATATCTAAAGTGTTTCCTGTTTT
ATTGGAATTAGAATTATTGGGGTTGATAAGGGCAAATTCTGGGAGGAGATATTCTATCATTTAG

Domains

Predicted by InterproScan.

• DNA recombination-mediator protein A (DNA_processg_A) (77-281)

• DprA winged helix domain (DprA_WH) (309-361)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Riemerella anatipestifer ATCC 11845 = DSM 15868	100	100	1