Detailed information NTG0632542

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N5O92_RS05420
• Genome accession: NZ_CP104721
• Coordinates: 1117359..1118351 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ECO3183
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1112359..1123351

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N5O92_RS05390 (N5O92_05390)	ispD	1112420..1113130 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
N5O92_RS05395 (N5O92_05395)	ispF	1113130..1113609 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N5O92_RS05400 (N5O92_05400)	truD	1113606..1114655 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
N5O92_RS05405 (N5O92_05405)	surE	1114636..1115397 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
N5O92_RS05410 (N5O92_05410)	pcm	1115391..1116017 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
N5O92_RS05415 (N5O92_05415)	nlpD	1116202..1117296 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
N5O92_RS05420 (N5O92_05420)	rpoS	1117359..1118351 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
N5O92_RS05425 (N5O92_05425)	ygbN	1118445..1119809 (-)	1365	WP_000104441.1	GntP family transporter	-
N5O92_RS05430 (N5O92_05430)	ygbM	1119898..1120674 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
N5O92_RS05435 (N5O92_05435)	ygbL	1120679..1121317 (-)	639	WP_001278994.1	aldolase	-
N5O92_RS05440 (N5O92_05440)	otnK	1121314..1122576 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=632542 N5O92_RS05420 WP_000081550.1 1117359..1118351(+) (rpoS) [Escherichia coli strain ECO3183]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=632542 N5O92_RS05420 WP_000081550.1 1117359..1118351(+) (rpoS) [Escherichia coli strain ECO3183]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715