Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AWB56_RS04000 Genome accession   NZ_CP088073
Coordinates   851650..853419 (-) Length   589 a.a.
NCBI ID   WP_231348779.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0122     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 846650..858419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB56_RS03980 (AWB56_003980) dinB 846819..847901 (-) 1083 WP_013446916.1 DNA polymerase IV -
  AWB56_RS03985 (AWB56_003985) - 847987..848757 (-) 771 WP_004918231.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  AWB56_RS03990 (AWB56_003990) - 848781..850793 (-) 2013 WP_004918229.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  AWB56_RS03995 (AWB56_003995) - 850858..851526 (-) 669 WP_004918227.1 succinate dehydrogenase cytochrome b subunit -
  AWB56_RS04000 (AWB56_004000) comEC 851650..853419 (-) 1770 WP_231348779.1 ComEC/Rec2 family competence protein Machinery gene
  AWB56_RS04005 (AWB56_004005) - 853508..853945 (-) 438 WP_004918223.1 hypothetical protein -
  AWB56_RS04010 (AWB56_004010) - 853945..855573 (-) 1629 WP_004918222.1 acyl-CoA carboxylase subunit beta -
  AWB56_RS04015 (AWB56_004015) - 855678..856871 (-) 1194 WP_004918219.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 68894.42 Da        Isoelectric Point: 10.1905

>NTDB_id=632541 AWB56_RS04000 WP_231348779.1 851650..853419(-) (comEC) [Riemerella anatipestifer strain RCAD0122]
MKKQILFSLFISFSLGVFLQDLNGFSWQNLNIIAILGVISLGLIWVKADWVVRIRIWLLNIFFLCFGVFTHYLNSEKSVL
PSVSKKEELVFKIEQKLNSTAKNKRYEITAFHQNQPFKAVLSVPKDLEELDYKHYYQSQLSLYPLESSKNNYQFDYAKFQ
ARKGVYYRAYARDLRKAPKSELTFSEKMKRWRLEFLSNIDKNEKLSQQTRAFLKGIVLADRTEVDAGTNSNFRRSGLAHI
LAISGTHIAIIFGVVYMLLRLVLPVRFRIGVMLLSLSLIWAFAWFIGWGNSVVRACIMLTVYFGFVLLQRKPQVLDSLAL
AGLGILMVDTQELFSVGFQLSFSAVLGIYWFNRPMIRLFPNPRNKIQKLLLYTFTMSTAAQLGTMPIVIYYFHQYSAWSI
LANLVVLPLMEFVIILSFLMTIVFGLGVYWSWLSFAYDWLIKALLWLIGFFGKIELGYFQDIPLSVWEMGVLAVRLYFLR
EILVRFRWRGFMKLMFSVLLFFGIKMGLDVRAYHDKEARWHNHYHTKVFSVLDKGKVYFWVSDKDNLEVLESYLIKPYVI
SKRAESYKVKMMSEEINEVIFNGKRYPSQ

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=632541 AWB56_RS04000 WP_231348779.1 851650..853419(-) (comEC) [Riemerella anatipestifer strain RCAD0122]
GTGAAAAAGCAAATTCTTTTTAGTCTGTTTATAAGTTTTTCATTAGGTGTCTTTTTGCAAGACCTTAATGGGTTCTCGTG
GCAAAATCTCAATATTATAGCTATATTGGGGGTTATTAGTCTTGGGTTAATTTGGGTGAAAGCAGATTGGGTAGTTCGAA
TTAGAATTTGGTTACTCAATATCTTTTTTCTCTGTTTTGGAGTATTTACTCATTACCTTAATTCGGAAAAATCAGTTTTG
CCGAGTGTTTCTAAAAAGGAAGAGCTTGTTTTTAAAATTGAGCAAAAGCTGAATTCAACGGCTAAAAACAAACGCTATGA
AATAACAGCATTTCATCAAAATCAACCTTTTAAAGCAGTTTTATCTGTTCCAAAAGATTTGGAAGAATTGGATTATAAGC
ACTACTATCAGTCTCAACTAAGTCTATATCCGTTGGAGTCTTCCAAGAATAATTACCAGTTTGATTATGCCAAATTTCAA
GCAAGGAAAGGCGTATATTATAGAGCCTATGCCAGAGATTTACGCAAAGCTCCAAAATCAGAGCTTACTTTCTCCGAAAA
AATGAAACGATGGCGATTGGAATTCCTTAGTAATATAGATAAAAACGAAAAACTTTCACAGCAAACTAGAGCTTTCCTAA
AAGGAATTGTATTAGCCGATAGAACAGAGGTAGATGCAGGCACTAATTCCAATTTTAGGCGAAGTGGCTTGGCACATATT
TTGGCTATTTCGGGGACGCACATAGCAATTATATTCGGAGTGGTCTATATGCTGTTGAGGTTAGTGTTGCCTGTTAGATT
TCGGATTGGTGTAATGTTACTTAGTTTGTCGTTAATTTGGGCTTTTGCTTGGTTTATTGGTTGGGGAAATTCTGTTGTTA
GAGCCTGTATTATGCTTACGGTTTATTTTGGTTTTGTCCTTCTGCAAAGGAAACCGCAAGTTTTGGATTCTTTAGCCTTG
GCAGGATTAGGGATTTTGATGGTGGATACACAAGAGTTGTTTTCGGTGGGATTTCAATTGAGTTTTTCGGCAGTATTGGG
AATTTATTGGTTTAATAGACCTATGATTCGTCTTTTTCCAAATCCTAGAAACAAAATTCAAAAACTATTACTTTATACTT
TTACAATGTCTACAGCGGCACAGCTTGGGACTATGCCTATTGTGATTTATTATTTCCACCAGTATTCGGCGTGGTCTATT
TTGGCTAATCTTGTAGTACTTCCTTTAATGGAATTTGTGATTATACTATCGTTTTTAATGACAATCGTTTTTGGTTTAGG
AGTTTATTGGAGTTGGTTATCTTTTGCTTATGATTGGCTAATTAAAGCCTTGCTATGGCTGATAGGCTTCTTTGGTAAAA
TAGAGTTAGGGTATTTTCAAGATATACCGTTGAGTGTTTGGGAGATGGGAGTTTTGGCGGTAAGGCTTTATTTTCTAAGA
GAAATATTGGTTCGGTTTAGATGGAGAGGTTTTATGAAGTTGATGTTTTCTGTACTTTTATTTTTCGGGATTAAAATGGG
GCTAGATGTTAGAGCTTATCACGATAAAGAAGCGAGGTGGCATAACCATTATCACACTAAGGTATTTTCTGTTTTGGATA
AAGGAAAAGTGTATTTTTGGGTGTCAGATAAAGACAATTTAGAAGTGTTAGAAAGTTATCTCATAAAACCTTATGTGATT
TCTAAAAGAGCTGAAAGCTATAAAGTAAAGATGATGTCTGAAGAAATAAATGAGGTTATTTTTAATGGAAAAAGATATCC
GTCCCAATAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(216-476)

Domain of unknown function (DUF4131) (DUF4131)

(29-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Riemerella anatipestifer ATCC 11845 = DSM 15868

95.586

100

0.956