Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KO561_RS10855 Genome accession   NZ_CP088020
Coordinates   2087985..2089724 (-) Length   579 a.a.
NCBI ID   WP_231093284.1    Uniprot ID   -
Organism   Radiobacillus kanasensis strain 80     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2082985..2094724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO561_RS10835 (KO561_10835) safA 2083411..2084010 (-) 600 WP_231093280.1 SafA/ExsA family spore coat assembly protein -
  KO561_RS10840 (KO561_10840) - 2084025..2084834 (-) 810 WP_231093281.1 YkyB family protein -
  KO561_RS10845 (KO561_10845) spo0A 2085285..2086076 (-) 792 WP_231093282.1 sporulation transcription factor Spo0A -
  KO561_RS10850 (KO561_10850) spoIVB 2086306..2087589 (-) 1284 WP_231093283.1 SpoIVB peptidase -
  KO561_RS10855 (KO561_10855) recN 2087985..2089724 (-) 1740 WP_231093284.1 DNA repair protein RecN Machinery gene
  KO561_RS10860 (KO561_10860) ahrC 2089795..2090244 (-) 450 WP_231093285.1 transcriptional regulator AhrC/ArgR -
  KO561_RS10865 (KO561_10865) - 2090309..2091133 (-) 825 WP_231093286.1 TlyA family RNA methyltransferase -
  KO561_RS10870 (KO561_10870) dxs 2091138..2093030 (-) 1893 WP_231093287.1 1-deoxy-D-xylulose-5-phosphate synthase -
  KO561_RS10875 (KO561_10875) - 2093068..2093652 (-) 585 WP_231093288.1 hypothetical protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65753.49 Da        Isoelectric Point: 4.7094

>NTDB_id=632503 KO561_RS10855 WP_231093284.1 2087985..2089724(-) (recN) [Radiobacillus kanasensis strain 80]
MLTELSIKDFAIIDSLSITFKEGLTVMTGETGAGKSIIIDAVELLTGGRGSVEFVRYGSSKAEIEGLFTIEDLQHPIFKK
GSQLGIDVENEDGMIILSRTITSSGKSICRVNGKLVTLAILRELGKSLIDIHSQHETQSLMDSERHIELLDLYNRVQFLP
VLDEYNELYSKLESLKKRYTSFSENEKEMAQRLDLLKFQLNEIQTAELNPSEDEQLVEERNKLNNFERIFQGLQDAYQAL
YGEQKALDWLSMALNGLETAGEHDEDVKNKHEEFSNHYYLIEEMTYEIRNQLDQLEFDPERLNMIESRLNEIQKLKKKYG
QSVSEIVDYAVDIEEEIDQIENRDSHLSRLKKEIKELAHDTYLEAEQLHDLRKEAATQLTEAILQELKDLYLEKASFAVD
IQKRQAKEADVVDLDIPVHLNAHGFDMVKFLITTNPGEPLKEIGKVASGGELSRIMLALKKIFSKHQGVTSVIFDEVDTG
VSGRVAQAIAEKIHGISAGSQVLCITHLPQVASMADTHLLIEKRVDNDRTSTELTELSHDMKVEEIGRMITGTEMTETTK
QHAKELLSLAHKFKESHQY

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=632503 KO561_RS10855 WP_231093284.1 2087985..2089724(-) (recN) [Radiobacillus kanasensis strain 80]
GTGTTAACAGAACTATCGATAAAAGACTTTGCGATTATTGATTCATTATCCATAACCTTTAAGGAAGGGCTAACCGTAAT
GACAGGGGAAACTGGAGCAGGTAAGTCAATCATCATTGATGCTGTCGAGCTTTTAACTGGTGGAAGAGGTTCTGTTGAAT
TTGTCCGTTATGGATCAAGCAAAGCAGAAATTGAAGGGTTGTTTACGATTGAAGATCTACAACACCCTATTTTTAAAAAA
GGGAGTCAATTAGGAATTGATGTAGAAAATGAAGATGGGATGATTATTCTTAGCCGAACAATAACGTCATCTGGAAAGAG
CATCTGTAGAGTAAACGGAAAACTAGTTACCTTGGCGATACTAAGGGAGCTTGGGAAATCCCTAATTGACATACATAGTC
AACATGAAACACAATCCCTTATGGATTCTGAGCGACATATTGAATTATTAGATTTGTACAACCGAGTACAGTTTCTTCCG
GTGTTAGACGAATATAATGAATTATATTCTAAATTGGAGTCGTTAAAAAAACGATATACTTCCTTTAGTGAAAATGAAAA
GGAAATGGCCCAACGATTAGATTTACTAAAGTTCCAATTGAATGAAATTCAGACAGCGGAACTGAATCCGAGTGAAGATG
AACAGCTCGTGGAGGAAAGAAACAAGCTTAATAATTTTGAGCGAATTTTTCAAGGATTACAAGATGCTTATCAAGCTCTC
TACGGCGAGCAAAAAGCTTTAGATTGGTTGTCTATGGCCTTAAATGGTTTAGAAACTGCAGGAGAACATGATGAAGATGT
GAAGAATAAACATGAGGAATTCTCGAATCATTACTATTTAATCGAAGAAATGACCTATGAAATCCGTAACCAATTAGATC
AATTAGAATTTGATCCAGAACGACTTAACATGATTGAATCAAGATTAAATGAGATTCAAAAGCTAAAGAAGAAGTATGGT
CAGTCGGTTTCGGAAATTGTGGATTATGCAGTAGATATCGAAGAGGAAATCGATCAAATAGAAAATAGGGATTCTCATCT
ATCTCGTTTAAAGAAAGAGATAAAAGAGCTTGCTCATGATACGTATTTGGAGGCGGAACAGCTCCACGATCTCAGGAAAG
AAGCTGCAACTCAGTTAACAGAAGCCATTCTTCAAGAGTTGAAGGACCTTTATTTAGAAAAGGCTTCATTTGCAGTCGAT
ATTCAAAAACGGCAAGCAAAAGAAGCAGATGTTGTAGACTTGGACATTCCAGTTCATTTAAATGCTCATGGATTTGATAT
GGTGAAGTTTTTAATTACGACAAATCCTGGAGAACCATTAAAGGAAATCGGAAAGGTAGCTTCTGGAGGAGAACTTTCTC
GTATTATGCTTGCACTTAAGAAGATCTTTTCCAAGCACCAGGGCGTTACAAGTGTCATTTTTGATGAAGTGGATACGGGA
GTTAGTGGACGAGTAGCACAGGCTATTGCAGAGAAAATTCATGGTATTTCAGCTGGTTCCCAAGTTCTTTGTATTACTCA
CTTGCCTCAAGTGGCTTCAATGGCGGATACGCATTTACTCATCGAAAAACGAGTAGACAATGATCGTACGAGTACCGAAT
TAACAGAATTATCCCATGATATGAAAGTAGAAGAAATCGGCCGAATGATTACAGGTACCGAAATGACAGAAACTACCAAG
CAACACGCGAAAGAATTATTGAGTCTGGCACATAAGTTTAAGGAATCCCATCAATACTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

57.712

99.655

0.575