Detailed information NTG0632440

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N5P33_RS06725
• Genome accession: NZ_CP104720
• Coordinates: 1440860..1441864 (+)
• Length: 334 a.a.
• NCBI ID: WP_261734997.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain NY4593
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1435860..1446864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N5P33_RS06695 (N5P33_06695)	fghA	1435952..1436803 (+)	852	WP_003109330.1	S-formylglutathione hydrolase	-
N5P33_RS06700 (N5P33_06700)	ispF	1436874..1437347 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N5P33_RS06705 (N5P33_06705)	truD	1437344..1438411 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
N5P33_RS06710 (N5P33_06710)	surE	1438399..1439148 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
N5P33_RS06715 (N5P33_06715)	-	1439181..1439816 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
N5P33_RS06720 (N5P33_06720)	-	1439862..1440755 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
N5P33_RS06725 (N5P33_06725)	rpoS	1440860..1441864 (+)	1005	WP_261734997.1	RNA polymerase sigma factor RpoS	Regulator
N5P33_RS06730 (N5P33_06730)	fdxA	1442291..1442614 (-)	324	WP_003092272.1	ferredoxin FdxA	-
N5P33_RS06735 (N5P33_06735)	mutS	1442681..1445248 (-)	2568	Protein_1333	DNA mismatch repair protein MutS	-
N5P33_RS06740 (N5P33_06740)	-	1445374..1446381 (-)	1008	WP_034071845.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38267.44 Da
• Isoelectric Point: 5.0478

>NTDB_id=632440 N5P33_RS06725 WP_261734997.1 1440860..1441864(+) (rpoS) [Pseudomonas aeruginosa strain NY4593]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHMVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=632440 N5P33_RS06725 WP_261734997.1 1440860..1441864(+) (rpoS) [Pseudomonas aeruginosa strain NY4593]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATATGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.159	98.204	0.65