Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | LQF73_RS01975 | Genome accession | NZ_CP088015 |
| Coordinates | 386265..387641 (+) | Length | 458 a.a. |
| NCBI ID | WP_005720413.1 | Uniprot ID | A0A2A7RGN6 |
| Organism | Lactobacillus crispatus strain M247 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 384104..406118 | 386265..387641 | within | 0 |
Gene organization within MGE regions
Location: 384104..406118
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQF73_RS01960 (LQF73_01955) | - | 384104..384403 (-) | 300 | WP_005721602.1 | hypothetical protein | - |
| LQF73_RS01965 (LQF73_01960) | - | 384510..385544 (+) | 1035 | WP_005729050.1 | IS30 family transposase | - |
| LQF73_RS01970 (LQF73_01965) | - | 385714..386265 (+) | 552 | WP_005720412.1 | dUTP diphosphatase | - |
| LQF73_RS01975 (LQF73_01970) | radA | 386265..387641 (+) | 1377 | WP_005720413.1 | DNA repair protein RadA | Machinery gene |
| LQF73_RS01980 (LQF73_01975) | gltX | 387719..389218 (+) | 1500 | WP_005720415.1 | glutamate--tRNA ligase | - |
| LQF73_RS01985 (LQF73_01980) | cysS | 389309..390742 (+) | 1434 | WP_005720416.1 | cysteine--tRNA ligase | - |
| LQF73_RS01990 (LQF73_01985) | - | 390735..391178 (+) | 444 | WP_005720417.1 | mini-ribonuclease III | - |
| LQF73_RS01995 (LQF73_01990) | rlmB | 391165..391920 (+) | 756 | WP_005720418.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| LQF73_RS02000 (LQF73_01995) | - | 392054..392599 (+) | 546 | WP_005720419.1 | DNA-directed RNA polymerase subunit sigma | - |
| LQF73_RS02005 (LQF73_02000) | - | 392663..392881 (+) | 219 | WP_005720420.1 | hypothetical protein | - |
| LQF73_RS02010 (LQF73_02005) | - | 392997..394505 (+) | 1509 | WP_005725562.1 | gluconokinase | - |
| LQF73_RS02015 (LQF73_02010) | - | 394552..396297 (-) | 1746 | WP_031267115.1 | 1-deoxy-D-xylulose-5-phosphate synthase | - |
| LQF73_RS02020 (LQF73_02015) | rpmG | 396483..396632 (+) | 150 | WP_005720427.1 | 50S ribosomal protein L33 | - |
| LQF73_RS02025 (LQF73_02020) | secE | 396642..396812 (+) | 171 | WP_005720429.1 | preprotein translocase subunit SecE | - |
| LQF73_RS02030 (LQF73_02025) | nusG | 396921..397478 (+) | 558 | WP_005721593.1 | transcription termination/antitermination protein NusG | - |
| LQF73_RS02035 (LQF73_02030) | rplK | 397609..398034 (+) | 426 | WP_005720433.1 | 50S ribosomal protein L11 | - |
| LQF73_RS02040 (LQF73_02035) | rplA | 398112..398804 (+) | 693 | WP_005720434.1 | 50S ribosomal protein L1 | - |
| LQF73_RS02045 (LQF73_02040) | - | 398924..399790 (+) | 867 | WP_005720435.1 | phosphate ABC transporter substrate-binding protein | - |
| LQF73_RS02050 (LQF73_02045) | pstC | 399794..400789 (+) | 996 | WP_005720436.1 | phosphate ABC transporter permease subunit PstC | - |
| LQF73_RS02055 (LQF73_02050) | pstA | 400791..401678 (+) | 888 | WP_005720437.1 | phosphate ABC transporter permease PstA | - |
| LQF73_RS02060 (LQF73_02055) | pstB | 401687..402481 (+) | 795 | WP_005720438.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| LQF73_RS02065 (LQF73_02060) | pstB | 402483..403238 (+) | 756 | WP_005721590.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| LQF73_RS02070 (LQF73_02065) | phoU | 403256..403933 (+) | 678 | WP_005720440.1 | phosphate signaling complex protein PhoU | - |
| LQF73_RS02075 (LQF73_02070) | - | 403994..404627 (-) | 634 | Protein_403 | transposase | - |
| LQF73_RS02080 (LQF73_02075) | - | 404709..404987 (+) | 279 | WP_005720443.1 | hypothetical protein | - |
| LQF73_RS02085 (LQF73_02080) | rplJ | 405191..405703 (+) | 513 | WP_005720444.1 | 50S ribosomal protein L10 | - |
| LQF73_RS02090 (LQF73_02085) | rplL | 405756..406118 (+) | 363 | WP_005720445.1 | 50S ribosomal protein L7/L12 | - |
Sequence
Protein
Download Length: 458 a.a. Molecular weight: 50214.83 Da Isoelectric Point: 7.1405
>NTDB_id=632432 LQF73_RS01975 WP_005720413.1 386265..387641(+) (radA) [Lactobacillus crispatus strain M247]
MARVKTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGLNEPVKLDKIKAEKEERIVTKSE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSDLSEKYKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDI
REQINDVKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDEHHSYRILHSVKNRFGAANEIGMFEMVNEGLREVTNPSSIFLDQRLPNSTGSAVVVSLEGTRPLLAEIQALVTPTA
FGYAKRTTSGISFNKASLLLAVLEKRGNLMLQNQDVYLTATGGIKLNEPAIDLAIAMAVASSYTDKEISPTDCFVGEVGL
TGEVRRVDKIDARVKEAAKVGFKRIFIPRHNMYSGLKDHGIEVIPVSSIPQALKLVFG
MARVKTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGLNEPVKLDKIKAEKEERIVTKSE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSDLSEKYKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDI
REQINDVKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDEHHSYRILHSVKNRFGAANEIGMFEMVNEGLREVTNPSSIFLDQRLPNSTGSAVVVSLEGTRPLLAEIQALVTPTA
FGYAKRTTSGISFNKASLLLAVLEKRGNLMLQNQDVYLTATGGIKLNEPAIDLAIAMAVASSYTDKEISPTDCFVGEVGL
TGEVRRVDKIDARVKEAAKVGFKRIFIPRHNMYSGLKDHGIEVIPVSSIPQALKLVFG
Nucleotide
Download Length: 1377 bp
>NTDB_id=632432 LQF73_RS01975 WP_005720413.1 386265..387641(+) (radA) [Lactobacillus crispatus strain M247]
ATGGCTAGAGTAAAAACACAATATAAGTGTCGTTCTTGCGGCTATATTTCGGCAAGTTATTTAGGCCGCTGTCCTAACTG
TGGTGCCTGGAATCAATTTGAAAAAGAAACTGAAGAAGTGCAAAAGCGTTCTACTAAGGCAACTGCTAGTCGTTTGATTC
AGAAGACTGGATTAAATGAACCGGTAAAGCTGGATAAGATTAAAGCTGAAAAAGAAGAACGAATTGTCACTAAATCTGAG
GAATTAAACCGCGTTTTAGGTGGTGGTATTGTACCAGGCTCACTAGTTTTAATTGGTGGAGATCCCGGAATTGGTAAGTC
AACCTTGATGTTACAAATTATGAGTGACTTATCTGAAAAATATAAGGTGCTTTACGTTTCGGGAGAAGAATCAGCTAACC
AAATCAAATTGCGGGCTGACCGACTGGGTGTAGGTCAAAGTAATATGCTCTTATATCCAGAGACTGACATGCATGATATT
CGCGAACAAATCAATGATGTTAAGCCTGACTTTGTTGTAATCGACTCCATTCAAACTATGAATGAACCAAGTCTTGATTC
GATGACTGGCTCTGCCTCACAGGTTCGTGAAGTAACAAGTGAATTAATGAAAATTGCCAAGATGGATGCCATTACAGTTT
TTGTTATCGGCCACGTTACAAAAGAGGGTGCGATTGCTGGGCCTAAGATCTTGGAACATATGGTGGATACCGTTCTCTAT
TTTGAAGGGGATGAACACCATTCTTACCGAATTTTGCATTCTGTTAAAAACCGTTTTGGAGCAGCAAACGAAATTGGAAT
GTTTGAAATGGTTAATGAAGGCTTAAGAGAGGTAACTAATCCATCATCAATTTTTCTGGACCAAAGATTACCTAATTCTA
CTGGCTCTGCTGTGGTGGTATCGCTTGAAGGAACTAGGCCACTTTTAGCAGAAATTCAGGCTTTGGTTACTCCGACAGCT
TTTGGCTATGCTAAAAGGACCACGTCAGGTATTAGTTTTAACAAAGCTTCATTGCTGCTAGCGGTGCTTGAAAAGCGGGG
AAACTTAATGTTGCAGAATCAAGATGTCTATTTGACTGCAACTGGTGGGATTAAATTGAATGAACCAGCAATTGATTTAG
CAATTGCCATGGCAGTTGCATCCAGTTATACCGATAAAGAAATTTCGCCGACAGATTGTTTTGTAGGCGAAGTGGGCTTA
ACTGGTGAAGTTCGCCGAGTTGATAAAATCGATGCACGAGTAAAAGAAGCGGCTAAAGTAGGGTTTAAGCGGATCTTTAT
TCCACGGCATAATATGTATTCTGGATTAAAAGATCATGGCATTGAAGTAATTCCCGTTTCGAGTATTCCCCAAGCTTTAA
AATTAGTTTTTGGCTAG
ATGGCTAGAGTAAAAACACAATATAAGTGTCGTTCTTGCGGCTATATTTCGGCAAGTTATTTAGGCCGCTGTCCTAACTG
TGGTGCCTGGAATCAATTTGAAAAAGAAACTGAAGAAGTGCAAAAGCGTTCTACTAAGGCAACTGCTAGTCGTTTGATTC
AGAAGACTGGATTAAATGAACCGGTAAAGCTGGATAAGATTAAAGCTGAAAAAGAAGAACGAATTGTCACTAAATCTGAG
GAATTAAACCGCGTTTTAGGTGGTGGTATTGTACCAGGCTCACTAGTTTTAATTGGTGGAGATCCCGGAATTGGTAAGTC
AACCTTGATGTTACAAATTATGAGTGACTTATCTGAAAAATATAAGGTGCTTTACGTTTCGGGAGAAGAATCAGCTAACC
AAATCAAATTGCGGGCTGACCGACTGGGTGTAGGTCAAAGTAATATGCTCTTATATCCAGAGACTGACATGCATGATATT
CGCGAACAAATCAATGATGTTAAGCCTGACTTTGTTGTAATCGACTCCATTCAAACTATGAATGAACCAAGTCTTGATTC
GATGACTGGCTCTGCCTCACAGGTTCGTGAAGTAACAAGTGAATTAATGAAAATTGCCAAGATGGATGCCATTACAGTTT
TTGTTATCGGCCACGTTACAAAAGAGGGTGCGATTGCTGGGCCTAAGATCTTGGAACATATGGTGGATACCGTTCTCTAT
TTTGAAGGGGATGAACACCATTCTTACCGAATTTTGCATTCTGTTAAAAACCGTTTTGGAGCAGCAAACGAAATTGGAAT
GTTTGAAATGGTTAATGAAGGCTTAAGAGAGGTAACTAATCCATCATCAATTTTTCTGGACCAAAGATTACCTAATTCTA
CTGGCTCTGCTGTGGTGGTATCGCTTGAAGGAACTAGGCCACTTTTAGCAGAAATTCAGGCTTTGGTTACTCCGACAGCT
TTTGGCTATGCTAAAAGGACCACGTCAGGTATTAGTTTTAACAAAGCTTCATTGCTGCTAGCGGTGCTTGAAAAGCGGGG
AAACTTAATGTTGCAGAATCAAGATGTCTATTTGACTGCAACTGGTGGGATTAAATTGAATGAACCAGCAATTGATTTAG
CAATTGCCATGGCAGTTGCATCCAGTTATACCGATAAAGAAATTTCGCCGACAGATTGTTTTGTAGGCGAAGTGGGCTTA
ACTGGTGAAGTTCGCCGAGTTGATAAAATCGATGCACGAGTAAAAGAAGCGGCTAAAGTAGGGTTTAAGCGGATCTTTAT
TCCACGGCATAATATGTATTCTGGATTAAAAGATCATGGCATTGAAGTAATTCCCGTTTCGAGTATTCCCCAAGCTTTAA
AATTAGTTTTTGGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Streptococcus pneumoniae Rx1 |
57.549 |
99.782 |
0.574 |
| radA | Streptococcus pneumoniae D39 |
57.549 |
99.782 |
0.574 |
| radA | Streptococcus pneumoniae R6 |
57.549 |
99.782 |
0.574 |
| radA | Streptococcus pneumoniae TIGR4 |
57.549 |
99.782 |
0.574 |
| radA | Streptococcus mitis SK321 |
57.549 |
99.782 |
0.574 |
| radA | Streptococcus mitis NCTC 12261 |
57.549 |
99.782 |
0.574 |
| radA | Bacillus subtilis subsp. subtilis str. 168 |
55.773 |
100 |
0.559 |