Detailed information NTG0632383

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: LQT99_RS16770
• Genome accession: NZ_CP088005
• Coordinates: 3395172..3396335 (-)
• Length: 387 a.a.
• NCBI ID: WP_007407484.1
• Uniprot ID: A3KLC1
• Organism: Bacillus amyloliquefaciens strain bm
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3390172..3401335

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQT99_RS16740 (LQT99_16705)	-	3390436..3390855 (-)	420	WP_012118571.1	TIGR03826 family flagellar region protein	-
LQT99_RS16745 (LQT99_16710)	comFC	3390929..3391618 (-)	690	WP_196770545.1	phosphoribosyltransferase family protein	Machinery gene
LQT99_RS16750 (LQT99_16715)	-	3391624..3391908 (-)	285	WP_003151389.1	competence protein ComFB	-
LQT99_RS16755 (LQT99_16720)	comFA	3391966..3393351 (-)	1386	WP_032876163.1	DEAD/DEAH box helicase	Machinery gene
LQT99_RS16760 (LQT99_16725)	-	3393460..3394308 (-)	849	WP_032876160.1	DegV family protein	-
LQT99_RS16765 (LQT99_16730)	degU	3394406..3395095 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
LQT99_RS16770 (LQT99_16735)	degS	3395172..3396335 (-)	1164	WP_007407484.1	two-component sensor histidine kinase DegS	Regulator
LQT99_RS16775 (LQT99_16740)	-	3396558..3397205 (+)	648	WP_007614107.1	YigZ family protein	-
LQT99_RS16780 (LQT99_16745)	-	3397210..3398391 (+)	1182	WP_032876157.1	LCP family protein	-
LQT99_RS16785 (LQT99_16750)	-	3398490..3399566 (-)	1077	WP_003151382.1	MraY family glycosyltransferase	-
LQT99_RS16790 (LQT99_16755)	-	3399699..3400895 (-)	1197	WP_032876154.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.78 Da
• Isoelectric Point: 6.8616

>NTDB_id=632383 LQT99_RS16770 WP_007407484.1 3395172..3396335(-) (degS) [Bacillus amyloliquefaciens strain bm]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=632383 LQT99_RS16770 WP_007407484.1 3395172..3396335(-) (degS) [Bacillus amyloliquefaciens strain bm]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATTATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTACGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACAGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAATGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A3KLC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.584	99.483	0.951