Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   N149_RS01755 Genome accession   NC_022660
Coordinates   353942..355123 (+) Length   393 a.a.
NCBI ID   WP_023362128.1    Uniprot ID   -
Organism   Campylobacter coli 15-537360     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 348942..360123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N149_RS01740 (N149_1377) - 349515..349916 (-) 402 WP_002792798.1 sugar 3,4-ketoisomerase -
  N149_RS08910 - 350178..351845 (+) 1668 WP_228761997.1 hypothetical protein -
  N149_RS01750 (N149_1375) - 351918..353945 (+) 2028 WP_023362130.1 capsular polysaccharide biosynthesis protein -
  N149_RS01755 (N149_1374) kpsS 353942..355123 (+) 1182 WP_023362128.1 capsule biosynthesis protein Regulator
  N149_RS01760 (N149_1373) - 355192..356313 (+) 1122 WP_004289218.1 DUF829 domain-containing protein -
  N149_RS01765 (N149_1372) - 356310..357680 (+) 1371 WP_002783822.1 cytochrome P450 -
  N149_RS01770 (N149_1371) - 357677..358099 (+) 423 WP_002783824.1 hypothetical protein -
  N149_RS01775 (N149_1370) acpS 358102..358449 (-) 348 WP_002779165.1 holo-ACP synthase -
  N149_RS01780 (N149_1369) fliL 358449..358985 (-) 537 WP_023362126.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 46446.23 Da        Isoelectric Point: 10.0888

>NTDB_id=63235 N149_RS01755 WP_023362128.1 353942..355123(+) (kpsS) [Campylobacter coli 15-537360]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFFFYPSGKRCKCDEKDLENFYENFFKEKKI
DAIVMYNDCRLIHAKAIKVARKLGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSAFLYWLFSFLLAPFFNNKLHHRTLFPFEFLFWFRSLYRKYLYKLTEKKLNQKIYSLEKKYFLAILQVYNDTQIKHH
YKKSIEEFIEETILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVEGRILYVHDTYLPTLLKKALGCITINS
TVGLSAILEGCPTKVCGNAFYNFEGLAYPKKLQFFWREAHAYKPNPSLVINFKNYLLNTNQFNGNFYKNSFLG

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=63235 N149_RS01755 WP_023362128.1 353942..355123(+) (kpsS) [Campylobacter coli 15-537360]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGCACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAACGGAGGGGATTTTTTTTTCT
ATCCAAGTGGAAAAAGGTGCAAGTGCGATGAAAAGGATCTTGAAAATTTCTATGAAAATTTTTTCAAAGAAAAAAAAATA
GATGCTATTGTGATGTATAATGATTGCCGTTTGATTCACGCAAAGGCTATTAAAGTGGCTAGGAAACTTGGCATTGGCAT
TTGGATTTTTGAAGAGGGGTATTTAAGACCTTATTGTATCACTTTTGAAAAAGATGGAGTCAATGCAAACTCTTCTTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCTTTTAGTGCTTTTTTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CTTATTTCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATATCTTTATAAACTCACAGAAAAAAAACTTA
ATCAAAAAATTTATAGCCTTGAAAAAAAGTACTTTTTGGCTATTTTACAAGTTTATAATGATACGCAAATTAAACACCAT
TATAAAAAAAGTATAGAAGAATTTATAGAAGAAACCATCCTTTCTTTTGCAAATCATGCAAGGGCAAAGTCTTATCTTGT
CTTTAAGCATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTGATAAATGAGCTAAGCCAAAAATACCATGTAG
AAGGAAGAATTTTATATGTGCACGATACTTATTTACCCACTCTTTTAAAAAAGGCTTTGGGTTGCATCACGATCAATTCT
ACAGTAGGTTTAAGTGCTATTTTGGAGGGCTGTCCTACTAAGGTTTGTGGAAATGCATTTTATAATTTTGAAGGCCTAGC
TTATCCAAAAAAACTTCAATTTTTTTGGCGCGAAGCTCATGCTTATAAACCCAATCCTAGCTTGGTTATAAATTTTAAAA
ATTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCGTTTTTAGGTTGA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

88.52

99.746

0.883

Multiple sequence alignment