Detailed information NTG0063231

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: N149_RS01515
• Genome accession: NC_022660
• Coordinates: 306275..307693 (+)
• Length: 472 a.a.
• NCBI ID: WP_002833219.1
• Uniprot ID: -
• Organism: Campylobacter coli 15-537360
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 301275..312693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N149_RS01500 (N149_1425)	-	301660..302298 (+)	639	WP_002784063.1	HAD family hydrolase	-
N149_RS01505 (N149_1424)	nifJ	302402..305962 (+)	3561	WP_002779317.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
N149_RS01510 (N149_1423)	ctsR	305986..306297 (+)	312	WP_002779316.1	hypothetical protein	Machinery gene
N149_RS01515 (N149_1422)	ctsD	306275..307693 (+)	1419	WP_002833219.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
N149_RS01520 (N149_1421)	ctsP	307686..308282 (+)	597	WP_002779314.1	ATP-binding protein	Machinery gene
N149_RS01525 (N149_1420)	-	308279..308875 (+)	597	WP_002779313.1	CDC27 family protein	-
N149_RS01530 (N149_1419)	ctsE	308868..310430 (+)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
N149_RS01535 (N149_1418)	ctsF	310417..311592 (+)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
N149_RS01540 (N149_1417)	-	311589..312353 (-)	765	WP_002781157.1	TSUP family transporter	-

Sequence

Protein

• Length: 472 a.a.
• Molecular weight: 53455.02 Da
• Isoelectric Point: 6.7666

>NTDB_id=63231 N149_RS01515 WP_002833219.1 306275..307693(+) (ctsD) [Campylobacter coli 15-537360]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVGNTHIPSLRELGFKYNE

Nucleotide

• Length: 1419 bp

>NTDB_id=63231 N149_RS01515 WP_002833219.1 306275..307693(+) (ctsD) [Campylobacter coli 15-537360]
ATGATAAGATTAATATTTATTAAGATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGCCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGATCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTGCAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACGAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGTGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGGCAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAATACAATGAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (283-455)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	80.508	100	0.805