Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LQF05_RS16455 Genome accession   NZ_CP088004
Coordinates   3537039..3537596 (+) Length   185 a.a.
NCBI ID   WP_270066828.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain SB-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3532039..3542596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF05_RS16430 (LQF05_16415) speA 3532071..3533984 (-) 1914 WP_014595915.1 arginine decarboxylase -
  LQF05_RS16435 (LQF05_16420) - 3534106..3534477 (-) 372 WP_270066826.1 translation initiation factor Sui1 -
  LQF05_RS16440 (LQF05_16425) thiO 3534626..3535723 (-) 1098 WP_270066827.1 glycine oxidase ThiO -
  LQF05_RS16445 (LQF05_16430) - 3535877..3536371 (+) 495 WP_041771646.1 GspH/FimT family pseudopilin -
  LQF05_RS16450 (LQF05_16435) - 3536539..3537030 (+) 492 WP_013981877.1 GspH/FimT family pseudopilin -
  LQF05_RS16455 (LQF05_16440) pilV 3537039..3537596 (+) 558 WP_270066828.1 type IV pilus modification protein PilV Machinery gene
  LQF05_RS16460 (LQF05_16445) - 3537593..3538444 (+) 852 WP_270066829.1 PilW family protein -
  LQF05_RS16465 (LQF05_16450) - 3538441..3539046 (+) 606 WP_270066830.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20179.88 Da        Isoelectric Point: 4.5666

>NTDB_id=632305 LQF05_RS16455 WP_270066828.1 3537039..3537596(+) (pilV) [Stutzerimonas stutzeri strain SB-1]
MKTNKGFSLIEVLVALLLTTIGVLGMVALQGRSIQYTQDSVQRNTAILLSGDLIEIIRAHPKELFNTSPPQFPMNSGLKS
SSMFYKEAGSDFIDRESCVASPTRIAQTAKELRDCWADKVEAALPGGAELFDSDTYICRSSTPGSCDGQGSMLEIHMAWQ
VREGACLDSSNTDDTVCTYTVRVEQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=632305 LQF05_RS16455 WP_270066828.1 3537039..3537596(+) (pilV) [Stutzerimonas stutzeri strain SB-1]
ATGAAAACCAATAAAGGCTTCAGCCTGATCGAAGTGCTCGTAGCGCTACTGCTGACCACTATCGGAGTACTTGGAATGGT
GGCGCTGCAAGGCCGCAGCATCCAATACACCCAGGACTCCGTACAACGCAACACAGCCATTCTTCTGTCCGGAGACCTTA
TCGAAATCATACGGGCACACCCGAAAGAGCTCTTCAACACCTCGCCTCCACAGTTCCCCATGAACAGCGGATTAAAAAGC
AGCTCGATGTTCTACAAGGAGGCCGGAAGCGATTTCATTGATCGTGAAAGCTGCGTCGCTAGCCCGACCCGAATAGCGCA
GACAGCAAAAGAGTTGCGGGACTGCTGGGCGGACAAGGTGGAAGCGGCGCTACCTGGCGGAGCCGAGCTGTTCGACAGCG
ATACCTACATCTGCCGAAGCTCCACGCCGGGCAGTTGCGACGGCCAGGGCTCGATGCTCGAGATTCATATGGCCTGGCAA
GTTCGAGAAGGCGCCTGTCTCGACTCAAGCAATACCGACGACACCGTCTGCACCTATACCGTTCGGGTAGAACAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

49.451

98.378

0.486