Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   N149_RS01510 Genome accession   NC_022660
Coordinates   305986..306297 (+) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli 15-537360     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 300986..311297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N149_RS01500 (N149_1425) - 301660..302298 (+) 639 WP_002784063.1 HAD family hydrolase -
  N149_RS01505 (N149_1424) nifJ 302402..305962 (+) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  N149_RS01510 (N149_1423) ctsR 305986..306297 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  N149_RS01515 (N149_1422) ctsD 306275..307693 (+) 1419 WP_002833219.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  N149_RS01520 (N149_1421) ctsP 307686..308282 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  N149_RS01525 (N149_1420) - 308279..308875 (+) 597 WP_002779313.1 CDC27 family protein -
  N149_RS01530 (N149_1419) ctsE 308868..310430 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=63230 N149_RS01510 WP_002779316.1 305986..306297(+) (ctsR) [Campylobacter coli 15-537360]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=63230 N149_RS01510 WP_002779316.1 305986..306297(+) (ctsR) [Campylobacter coli 15-537360]
TTGTGTTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment