Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   LQF30_RS10520 Genome accession   NZ_CP088002
Coordinates   2166983..2167879 (-) Length   298 a.a.
NCBI ID   WP_258500227.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain IVK83     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2161983..2172879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF30_RS10505 (LQF30_10475) - 2163415..2164005 (-) 591 WP_217859194.1 DUF4064 domain-containing protein -
  LQF30_RS10510 (LQF30_10480) - 2164109..2166121 (-) 2013 WP_217859195.1 ABC transporter permease -
  LQF30_RS10515 (LQF30_10485) - 2166123..2166872 (-) 750 WP_002467826.1 ABC transporter ATP-binding protein -
  LQF30_RS10520 (LQF30_10490) braS 2166983..2167879 (-) 897 WP_258500227.1 HAMP domain-containing sensor histidine kinase Regulator
  LQF30_RS10525 (LQF30_10495) braR 2167885..2168550 (-) 666 WP_258500228.1 response regulator transcription factor Regulator
  LQF30_RS10530 (LQF30_10500) - 2168581..2168760 (-) 180 WP_002456719.1 hypothetical protein -
  LQF30_RS10535 (LQF30_10505) - 2169058..2170527 (+) 1470 WP_258500229.1 alkaline phosphatase -
  LQF30_RS10540 (LQF30_10510) - 2170650..2172194 (-) 1545 WP_258500230.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34918.54 Da        Isoelectric Point: 6.7779

>NTDB_id=632277 LQF30_RS10520 WP_258500227.1 2166983..2167879(-) (braS) [Staphylococcus epidermidis strain IVK83]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYVLAISIILLLMFVRWWIKYLSFKKNEHLKDKVAYLEHELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDL
IRPLILKYRIQFIEQKTQIHYEKSEDIILTDAQWASIMIEQLLNNALKYAKGKDIWIDFDVANQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNQGTVFFIHFTKEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=632277 LQF30_RS10520 WP_258500227.1 2166983..2167879(-) (braS) [Staphylococcus epidermidis strain IVK83]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTGTTTTCTTTACCTTTTGATGCATACGTACTAGCAATCAGTATCATATTACTATTGATGTTTGTACGTTGGTGGA
TAAAGTATTTAAGTTTTAAAAAGAATGAACATCTTAAAGATAAAGTAGCATATTTAGAACATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAACGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATCACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTAGACAAGAAATTGTGCACATTGATAATTATA
CAAGTCTCGCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGCCCGTTGATTTTAAAATATAGAATTCAGTTTATTGAACAAAAGACGCAAATCCATTATGAAAAAAGTGAGGACAT
TATTTTAACCGATGCACAATGGGCTTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATTTGGATAGATTTTGATGTTGCCAATCAAACTCTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACTGGTATAGGTCTATTTATAGT
GCAACACATTGCAAATCATTTAAATATACAAGTAACTGTACAATCAGAATTGAATCAGGGGACAGTATTTTTTATACATT
TTACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

60.339

98.993

0.597