Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   LQF30_RS05825 Genome accession   NZ_CP088002
Coordinates   1217006..1218073 (-) Length   355 a.a.
NCBI ID   WP_024051203.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain IVK83     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1212006..1223073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF30_RS05790 (LQF30_05780) gcvPA 1212197..1213543 (-) 1347 WP_002456181.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  LQF30_RS05795 (LQF30_05785) gcvT 1213563..1214654 (-) 1092 WP_145398408.1 glycine cleavage system aminomethyltransferase GcvT -
  LQF30_RS05800 (LQF30_05790) - 1214872..1215384 (-) 513 WP_002485736.1 shikimate kinase -
  LQF30_RS05805 (LQF30_05795) - 1215549..1216040 (-) 492 WP_002440043.1 competence type IV pilus minor pilin ComGF -
  LQF30_RS05810 (LQF30_05800) - 1215964..1216257 (-) 294 WP_001831116.1 hypothetical protein -
  LQF30_RS05815 (LQF30_05805) comGD 1216244..1216681 (-) 438 WP_001831025.1 competence type IV pilus minor pilin ComGD -
  LQF30_RS05820 (LQF30_05810) comGC 1216671..1216988 (-) 318 WP_001831271.1 competence type IV pilus major pilin ComGC Machinery gene
  LQF30_RS05825 (LQF30_05815) comGB 1217006..1218073 (-) 1068 WP_024051203.1 competence type IV pilus assembly protein ComGB Machinery gene
  LQF30_RS05830 (LQF30_05820) comGA 1218045..1219025 (-) 981 WP_263928721.1 competence type IV pilus ATPase ComGA Machinery gene
  LQF30_RS05835 (LQF30_05825) - 1219076..1219699 (-) 624 WP_032603490.1 MBL fold metallo-hydrolase -
  LQF30_RS05840 (LQF30_05830) - 1219699..1220025 (-) 327 WP_001831234.1 MTH1187 family thiamine-binding protein -
  LQF30_RS05845 (LQF30_05835) - 1220025..1221011 (-) 987 WP_001831113.1 ROK family glucokinase -
  LQF30_RS05850 (LQF30_05840) - 1221011..1221211 (-) 201 WP_001831138.1 YqgQ family protein -
  LQF30_RS05855 (LQF30_05845) - 1221195..1222655 (-) 1461 WP_001832757.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 42360.63 Da        Isoelectric Point: 10.1330

>NTDB_id=632261 LQF30_RS05825 WP_024051203.1 1217006..1218073(-) (comGB) [Staphylococcus epidermidis strain IVK83]
MKKLSINTFKYKRNKYLTEIQSIDLLQRLQQLLSHGFTLYQSFKFLNSYFKYKERTINKKIIQHLQNGATCYDILKIIGY
PELVLLQIKFAENYGNIEEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITRLPKLTFIFIFISGIAFFITYKFYYYLPIEKKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVHIYRNEQDNDFLKFLGDYLFKEANKGLPLPVILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=632261 LQF30_RS05825 WP_024051203.1 1217006..1218073(-) (comGB) [Staphylococcus epidermidis strain IVK83]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTACTACA
GAGATTACAACAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AACGAACAATAAATAAAAAGATTATCCAACATCTACAAAACGGTGCTACATGTTATGATATTTTAAAAATAATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGAGGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATCTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCGTCTTCCCAAACTAACTTTCATTTTTATCTTTATTAGTGGTATAGCATT
TTTTATCACTTATAAATTCTACTATTATCTACCAATTGAGAAAAAGTTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAACTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCATATATATCGTAATGAGCAAGATAACGATTTTCTTAAATTTCTGGGTGATTATCTTTTTAAAGAAGCTAATAA
AGGGCTCCCGTTACCTGTTATATTAATGAATTTAAAATGTTTTCAAAATGATTTGATTAAATTCATAGAACAAGGAGAGA
AAAATGGGAAATTAGATATAGAATTAAAGTTATACAGTCAAATGCTATTACAGCAATTTGAAGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTTGAACTTATGCAAACAATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(225-346)

Type II secretion system (T2SS), protein F (T2SSF)

(26-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

49.719

100

0.499
  comGB Staphylococcus aureus N315

49.719

100

0.499