Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N5913_RS24425 Genome accession   NZ_CP104649
Coordinates   4843339..4843944 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain PNUSAE008512     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4838339..4848944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5913_RS24395 (N5913_24395) rsmS 4839041..4839205 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  N5913_RS24400 (N5913_24400) priC 4839219..4839746 (-) 528 WP_000844886.1 primosomal replication protein N'' -
  N5913_RS24405 (N5913_24405) ybaN 4839816..4840193 (+) 378 WP_001188898.1 DUF454 family protein -
  N5913_RS24410 (N5913_24410) apt 4840346..4840897 (+) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  N5913_RS24415 (N5913_24415) dnaX 4841026..4842957 (+) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  N5913_RS24420 (N5913_24420) ybaB 4843010..4843339 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  N5913_RS24425 (N5913_24425) recR 4843339..4843944 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  N5913_RS24430 (N5913_24430) htpG 4844054..4845928 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  N5913_RS24435 (N5913_24435) adk 4846109..4846753 (+) 645 WP_001220233.1 adenylate kinase -
  N5913_RS24440 (N5913_24440) hemH 4846885..4847847 (+) 963 WP_001250105.1 ferrochelatase -
  N5913_RS24445 (N5913_24445) aes 4847844..4848803 (-) 960 WP_000801803.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=632243 N5913_RS24425 WP_001195025.1 4843339..4843944(+) (recR) [Escherichia coli strain PNUSAE008512]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=632243 N5913_RS24425 WP_001195025.1 4843339..4843944(+) (recR) [Escherichia coli strain PNUSAE008512]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACACTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443