Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LNN31_RS14055 Genome accession   NZ_CP087994
Coordinates   3007302..3008663 (-) Length   453 a.a.
NCBI ID   WP_148638736.1    Uniprot ID   A0A5D0WIP8
Organism   Acetobacterium wieringae strain Y     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3002302..3013663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNN31_RS14025 (LNN31_13985) yajC 3002447..3002827 (-) 381 WP_228882821.1 preprotein translocase subunit YajC -
  LNN31_RS14030 (LNN31_13990) tgt 3002846..3003967 (-) 1122 Protein_2744 tRNA guanosine(34) transglycosylase Tgt -
  LNN31_RS14035 (LNN31_13995) queA 3004257..3005282 (-) 1026 WP_070370500.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LNN31_RS14040 (LNN31_14000) ruvB 3005275..3006339 (-) 1065 WP_070370499.1 Holliday junction branch migration DNA helicase RuvB -
  LNN31_RS14045 (LNN31_14005) ruvA 3006343..3006945 (-) 603 WP_070370498.1 Holliday junction branch migration protein RuvA -
  LNN31_RS14055 (LNN31_14015) radA 3007302..3008663 (-) 1362 WP_148638736.1 DNA repair protein RadA Machinery gene
  LNN31_RS14060 (LNN31_14020) - 3008680..3009168 (-) 489 WP_070370496.1 VanZ family protein -
  LNN31_RS14065 (LNN31_14025) - 3009502..3010137 (-) 636 WP_228882818.1 YigZ family protein -
  LNN31_RS14070 (LNN31_14030) hflX 3010140..3011954 (-) 1815 WP_228882816.1 GTPase HflX -
  LNN31_RS14075 (LNN31_14035) - 3012030..3012914 (-) 885 WP_228882814.1 hypothetical protein -
  LNN31_RS14080 (LNN31_14040) - 3012887..3013207 (-) 321 WP_228882813.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49861.96 Da        Isoelectric Point: 6.1831

>NTDB_id=632168 LNN31_RS14055 WP_148638736.1 3007302..3008663(-) (radA) [Acetobacterium wieringae strain Y]
MAKKKSIFVCQSCGYESPKWMGKCPECGQWNSMVEELDFSKQGSKETIRERGVYSKPKSLAEITYTGDTRYPTCNEEFDR
VLGGGIVPGGMILLGGDPGIGKSTLLLQTTEALGNQGYKILYISGEESEQQLKMRAERMQVKSEKISFLSEINIPYLLTI
ILEERPDIVIIDSIQTMYSPDISSAPGSVSQIRENTGALMQLAKKDNIAMVLVGHVTKDGAIAGPRVLEHMVDTVLYFEG
EKYHAYRILRGVKNRFGSTNEIGIFEMTENGLQSVANPSEMMLDSRPENTCGSVVVPCIEGSRPLLIELQGLVSPTGFGN
PRRMATGMDYNRMVLLLAIMEKRLGIQMQSVDAYINVVGGIKVDEPALDLGVIAVLYSSLRDFQIPGDLMILGEVGLTGE
VRNIQHIEKRLIEGKKLGFKRCIIPKGNQKGLKIAGMTILPVDSIRSALDILL

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=632168 LNN31_RS14055 WP_148638736.1 3007302..3008663(-) (radA) [Acetobacterium wieringae strain Y]
ATGGCAAAGAAAAAAAGTATTTTTGTCTGTCAGAGCTGCGGTTACGAATCGCCCAAATGGATGGGTAAATGCCCGGAGTG
TGGGCAGTGGAATAGCATGGTGGAAGAGTTGGATTTTTCTAAGCAGGGAAGTAAGGAAACGATTCGGGAACGGGGCGTTT
ATTCTAAACCGAAGTCCCTGGCGGAGATTACCTATACTGGGGACACCCGCTACCCGACCTGCAATGAAGAGTTTGATCGG
GTTCTGGGTGGCGGGATTGTCCCTGGGGGGATGATCTTGCTGGGCGGTGACCCGGGGATCGGGAAATCGACGTTGCTTCT
GCAGACCACTGAAGCCCTGGGAAATCAGGGCTATAAGATTTTATATATTTCCGGCGAAGAGTCGGAACAGCAATTAAAAA
TGCGGGCAGAGCGAATGCAGGTAAAATCTGAAAAGATTTCTTTCTTATCGGAGATTAATATTCCCTATCTGCTGACGATT
ATTCTGGAAGAGCGGCCGGATATTGTCATTATCGATTCGATTCAGACCATGTACAGCCCGGACATCAGCTCAGCTCCAGG
CAGTGTCAGCCAGATCCGTGAAAACACCGGCGCACTGATGCAATTGGCCAAAAAAGATAATATCGCAATGGTGTTGGTGG
GGCATGTCACCAAAGATGGGGCCATTGCCGGTCCCCGGGTGCTGGAGCATATGGTTGATACGGTGCTTTATTTTGAGGGC
GAAAAATATCACGCTTATCGGATTCTAAGGGGTGTCAAAAATCGTTTTGGCTCCACCAATGAAATCGGGATTTTTGAAAT
GACTGAAAATGGATTGCAGTCGGTAGCCAATCCATCGGAGATGATGCTCGACAGCCGTCCCGAAAATACCTGTGGATCGG
TGGTGGTGCCCTGTATTGAGGGGTCCCGGCCGTTGCTGATTGAGCTGCAGGGGCTGGTTTCGCCCACTGGCTTTGGAAAT
CCCCGACGAATGGCCACTGGCATGGATTATAACCGGATGGTATTATTGCTGGCAATTATGGAGAAGCGGCTGGGAATTCA
GATGCAGTCGGTGGATGCGTACATCAATGTGGTGGGTGGCATCAAGGTGGATGAACCCGCACTCGATCTGGGAGTAATTG
CTGTACTTTACTCCAGCCTCCGGGATTTTCAGATCCCCGGCGATTTGATGATTCTGGGCGAGGTGGGATTAACGGGTGAA
GTCCGTAACATCCAGCACATCGAAAAACGCCTGATCGAAGGAAAAAAACTGGGCTTTAAGCGTTGCATTATCCCCAAAGG
CAACCAGAAAGGCTTGAAAATTGCCGGAATGACGATTCTCCCGGTAGATAGTATTCGTTCGGCCCTGGACATTTTACTGT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D0WIP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.525

100

0.545
  radA Streptococcus mitis NCTC 12261

53.009

95.364

0.506
  radA Streptococcus pneumoniae Rx1

52.535

95.806

0.503
  radA Streptococcus pneumoniae D39

52.535

95.806

0.503
  radA Streptococcus pneumoniae R6

52.535

95.806

0.503
  radA Streptococcus pneumoniae TIGR4

52.535

95.806

0.503
  radA Streptococcus mitis SK321

52.778

95.364

0.503