Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   LNN31_RS04265 Genome accession   NZ_CP087994
Coordinates   887499..887861 (+) Length   120 a.a.
NCBI ID   WP_228880748.1    Uniprot ID   -
Organism   Acetobacterium wieringae strain Y     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 882499..892861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNN31_RS04235 (LNN31_04230) - 882926..883402 (+) 477 WP_263992985.1 hypothetical protein -
  LNN31_RS04240 (LNN31_04235) - 883504..885036 (+) 1533 WP_263992986.1 IS1182 family transposase -
  LNN31_RS04245 (LNN31_04240) - 885793..886068 (+) 276 WP_228880751.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LNN31_RS04250 (LNN31_04245) - 886102..887055 (-) 954 WP_338076062.1 IS3 family transposase -
  LNN31_RS04255 (LNN31_04250) - 887013..887297 (-) 285 WP_070370063.1 transposase -
  LNN31_RS04260 (LNN31_04255) - 887414..887506 (+) 93 WP_338077684.1 hypothetical protein -
  LNN31_RS04265 (LNN31_04260) HI0659 887499..887861 (+) 363 WP_228880748.1 helix-turn-helix domain-containing protein Machinery gene
  LNN31_RS04270 (LNN31_04265) - 888424..888600 (+) 177 WP_228880745.1 type II toxin-antitoxin system HicA family toxin -
  LNN31_RS04275 (LNN31_04270) - 888633..889019 (+) 387 WP_263992987.1 type II toxin-antitoxin system HicB family antitoxin -
  LNN31_RS04280 (LNN31_04275) - 889071..890069 (+) 999 WP_263992988.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  LNN31_RS04285 (LNN31_04280) - 890044..890622 (+) 579 WP_228880737.1 hypothetical protein -
  LNN31_RS04290 (LNN31_04285) - 890694..890855 (+) 162 WP_228880734.1 hypothetical protein -
  LNN31_RS04295 (LNN31_04290) - 890864..891127 (+) 264 WP_338077685.1 DUF2442 domain-containing protein -
  LNN31_RS04300 (LNN31_04295) - 891268..891717 (+) 450 WP_228880731.1 hypothetical protein -
  LNN31_RS04305 (LNN31_04300) - 891963..892547 (+) 585 WP_263992989.1 hypothetical protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13781.08 Da        Isoelectric Point: 10.7734

>NTDB_id=632160 LNN31_RS04265 WP_228880748.1 887499..887861(+) (HI0659) [Acetobacterium wieringae strain Y]
MSKTKVSPIGSSWDEFEKRTFTPEEIMESDLRVALISELIRARNDQGITQKQLEEASGVKQPVIARMEKGSTDPQLMTIL
KILRPLGKTLAIVPIEEKHHRNIHLRTFKKGSTFRQKPMR

Nucleotide


Download         Length: 363 bp        

>NTDB_id=632160 LNN31_RS04265 WP_228880748.1 887499..887861(+) (HI0659) [Acetobacterium wieringae strain Y]
ATGAGTAAGACAAAAGTAAGTCCCATTGGATCAAGCTGGGATGAGTTTGAGAAAAGAACATTCACCCCGGAAGAAATAAT
GGAATCTGATTTGAGAGTAGCATTAATAAGCGAATTAATTCGTGCCAGAAATGATCAGGGAATCACTCAAAAGCAGTTGG
AAGAAGCAAGTGGTGTTAAGCAACCCGTCATTGCCCGAATGGAAAAAGGTTCAACAGATCCCCAATTGATGACCATTTTG
AAAATACTAAGACCACTTGGTAAAACCCTGGCCATTGTGCCAATAGAAGAAAAGCACCACCGAAACATTCATTTGAGAAC
ATTTAAAAAAGGTAGCACATTCAGGCAAAAACCCATGAGATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

64.583

80

0.517