Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   SAGCMC97051_RS04325 Genome accession   NZ_AP020310
Coordinates   764806..766638 (+) Length   610 a.a.
NCBI ID   WP_000389210.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GCMC97051     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 759806..771638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAGCMC97051_RS04320 (SAGCMC97051_07740) - 763056..764804 (+) 1749 WP_000259050.1 type IA DNA topoisomerase -
  SAGCMC97051_RS04325 (SAGCMC97051_07750) clpE 764806..766638 (+) 1833 WP_000389210.1 AAA family ATPase Regulator
  SAGCMC97051_RS04330 (SAGCMC97051_07760) - 766730..767077 (+) 348 WP_000843267.1 TrbC/VirB2 family protein -
  SAGCMC97051_RS04335 (SAGCMC97051_07770) - 767087..768154 (+) 1068 WP_000874144.1 hypothetical protein -
  SAGCMC97051_RS04340 (SAGCMC97051_07780) - 768164..770389 (+) 2226 WP_237395052.1 LPXTG cell wall anchor domain-containing protein -
  SAGCMC97051_RS04345 (SAGCMC97051_07790) - 770404..771114 (+) 711 WP_001042364.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68450.42 Da        Isoelectric Point: 5.1790

>NTDB_id=63208 SAGCMC97051_RS04325 WP_000389210.1 764806..766638(+) (clpE) [Streptococcus agalactiae strain GCMC97051]
MEDELKTPYLDQYTDNLSAKVAQKSDNYQVYGRDKEVQAVIISLLRRTKNNPILVGEAGVGKTAIVEGLTLAMLRDQVPE
ALKGLTVRSLELSSLMSEENGGFIAKFKKIIEEMVATRGHNLLFVDEFHTIVGAGGQDGQALDAGNVLKPVLARGDIQLI
GATTLDEFHDYIETDRALERRMQPVMVEETTIPQAITIIDQAKMIYEKFHGIQISSEAVRQAVRLSVRYITDRFLPDKAF
DLIDEASTIAATEGKATVTDEDIAQVLKDKTGIPVTTILKGDQDRLEGFKEKLMDRVKGQEAAIEAIVDAVTIAQAGLQD
ENKPISSFLFLGPTGVGKTELSKAVAEALFDDEDAMIRFDMSEFKKKEDVAKLIGNRETRTKGQLTEGVKRKPYSVLLLD
EVEKAHSEVMDLFLQVLDDGRLTDSSGRLISFKNVIVIMTTNVGAKKIINKWELKGNFKDLTDRDRQQFEKSMDSELQNV
FRPEFLNRIENKIIFNLLERNVIEEIAEKNLTKISARMKRQNLTLSYEPSLIQYLSDVGTDVKNGARPLERLIKRKVLAP
ISAKSLKLDKSKQTYNVHLLVTGEAPDNQHRKDLRQIQLDIEGEMESFFS

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=63208 SAGCMC97051_RS04325 WP_000389210.1 764806..766638(+) (clpE) [Streptococcus agalactiae strain GCMC97051]
TTGGAAGATGAACTGAAGACACCATATCTTGATCAATACACCGACAATCTCTCAGCTAAAGTTGCTCAAAAATCAGATAA
CTACCAAGTCTATGGGCGAGATAAAGAGGTTCAAGCCGTCATCATCTCTCTTCTCAGACGAACTAAAAATAATCCTATCT
TAGTAGGAGAAGCTGGAGTTGGAAAAACGGCTATTGTTGAAGGACTAACACTTGCGATGTTGCGTGACCAGGTTCCAGAA
GCGTTGAAAGGCTTAACCGTTCGTTCCCTGGAACTTTCTAGCTTGATGAGTGAAGAAAACGGTGGTTTTATTGCTAAATT
CAAAAAAATCATTGAGGAGATGGTTGCTACACGTGGCCACAATCTTCTCTTTGTGGATGAGTTTCATACGATTGTTGGAG
CAGGTGGTCAGGATGGCCAAGCACTTGATGCAGGAAATGTACTTAAACCCGTCTTGGCCCGTGGCGATATTCAGTTGATT
GGAGCAACTACTTTAGATGAGTTCCATGATTATATTGAAACCGATAGGGCCCTAGAACGTCGGATGCAACCAGTTATGGT
TGAAGAGACAACAATTCCACAAGCTATAACCATTATTGATCAAGCAAAAATGATTTACGAGAAGTTTCATGGAATTCAAA
TTTCCTCAGAGGCTGTTCGTCAAGCAGTCCGTCTATCTGTCCGCTATATTACAGATCGCTTTTTACCAGATAAAGCTTTT
GATTTAATCGATGAAGCTTCTACGATTGCTGCGACTGAAGGAAAAGCAACTGTTACTGATGAAGATATAGCTCAGGTTTT
AAAAGATAAGACAGGGATTCCTGTGACGACAATTCTAAAAGGAGACCAGGACCGTTTAGAGGGCTTCAAAGAAAAGTTGA
TGGATCGAGTCAAAGGGCAAGAAGCTGCTATTGAAGCTATTGTAGATGCTGTAACTATTGCCCAAGCAGGTTTACAAGAC
GAAAACAAACCTATTTCCTCATTTCTTTTTCTTGGTCCAACTGGGGTTGGTAAAACAGAATTATCCAAGGCTGTTGCAGA
AGCACTCTTTGATGATGAGGATGCCATGATTCGCTTTGATATGTCTGAATTCAAGAAAAAAGAAGATGTGGCCAAGCTGA
TTGGTAATCGTGAGACAAGAACCAAAGGGCAGCTAACTGAAGGGGTTAAACGGAAACCTTACTCTGTCTTGTTGCTAGAT
GAGGTCGAAAAAGCCCATAGTGAGGTGATGGACTTATTCTTACAAGTATTAGACGATGGCCGCTTAACAGATAGTTCTGG
TCGGTTAATTAGCTTTAAGAACGTTATAGTCATTATGACAACAAACGTTGGAGCTAAAAAGATTATCAATAAGTGGGAGC
TGAAAGGGAATTTTAAAGATTTGACTGATCGTGATAGGCAGCAATTTGAAAAGTCTATGGACAGTGAGCTACAAAATGTG
TTTCGTCCAGAGTTTCTTAATAGGATTGAAAATAAAATTATCTTCAATCTCTTAGAGAGAAATGTTATTGAAGAAATTGC
AGAAAAAAACCTCACTAAAATTTCAGCTCGAATGAAGCGACAAAATCTAACGTTATCGTATGAACCTAGCTTGATTCAGT
ATCTGTCCGATGTTGGTACTGACGTTAAAAATGGGGCACGTCCGTTAGAGCGCTTAATTAAACGGAAAGTATTAGCACCT
ATTTCTGCTAAGAGTTTAAAATTGGATAAAAGTAAACAAACCTATAATGTTCATTTATTGGTTACTGGCGAAGCACCAGA
CAATCAACACAGAAAAGATTTGAGACAAATTCAGTTGGATATTGAAGGAGAAATGGAGTCTTTTTTCAGCTGA

Domains

Predicted by InterProScan.

AAA lid domain (AAA_lid_9)

(192-265)

AAA domain (Cdc48 subfamily) (AAA_2)

(323-490)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-169)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(498-568)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae TIGR4

42.384

99.016

0.42
  clpE Streptococcus pneumoniae Rx1

42.384

99.016

0.42
  clpE Streptococcus pneumoniae D39

42.384

99.016

0.42
  clpE Streptococcus pneumoniae R6

42.384

99.016

0.42
  clpE Streptococcus mutans UA159

41.845

99.508

0.416
  clpC Bacillus subtilis subsp. subtilis str. 168

39.715

100

0.411
  clpC Lactococcus lactis subsp. cremoris KW2

39.868

99.508

0.397
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

38.825

100

0.39
  clpC Streptococcus mutans UA159

39.43

97.705

0.385
  clpC Streptococcus pneumoniae Rx1

39.358

97.049

0.382
  clpC Streptococcus pneumoniae D39

39.358

97.049

0.382
  clpC Streptococcus pneumoniae TIGR4

39.358

97.049

0.382
  clpC Streptococcus thermophilus LMD-9

38.889

97.377

0.379
  clpC Streptococcus thermophilus LMG 18311

38.721

97.377

0.377

Multiple sequence alignment