Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N5932_RS17180 Genome accession   NZ_CP104645
Coordinates   3498067..3498672 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain PNUSAE019785     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3493067..3503672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5932_RS17150 (N5932_17150) rsmS 3493769..3493933 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  N5932_RS17155 (N5932_17155) priC 3493947..3494474 (-) 528 WP_000844886.1 primosomal replication protein N'' -
  N5932_RS17160 (N5932_17160) ybaN 3494544..3494921 (+) 378 WP_001188898.1 DUF454 family protein -
  N5932_RS17165 (N5932_17165) apt 3495074..3495625 (+) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  N5932_RS17170 (N5932_17170) dnaX 3495754..3497685 (+) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  N5932_RS17175 (N5932_17175) ybaB 3497738..3498067 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  N5932_RS17180 (N5932_17180) recR 3498067..3498672 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  N5932_RS17185 (N5932_17185) htpG 3498782..3500656 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  N5932_RS17190 (N5932_17190) adk 3500837..3501481 (+) 645 WP_001220233.1 adenylate kinase -
  N5932_RS17195 (N5932_17195) hemH 3501613..3502575 (+) 963 WP_001250105.1 ferrochelatase -
  N5932_RS17200 (N5932_17200) aes 3502572..3503531 (-) 960 WP_000801803.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=632073 N5932_RS17180 WP_001195025.1 3498067..3498672(+) (recR) [Escherichia coli strain PNUSAE019785]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=632073 N5932_RS17180 WP_001195025.1 3498067..3498672(+) (recR) [Escherichia coli strain PNUSAE019785]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACACTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443