Detailed information NTG0632071

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: LOC77_RS18660
• Genome accession: NZ_CP087957
• Coordinates: 3716465..3717610 (+)
• Length: 381 a.a.
• NCBI ID: WP_171463628.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain B-001
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3711465..3722610

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOC77_RS18640	-	3711939..3712655 (-)	717	WP_003151075.1	Crp/Fnr family transcriptional regulator	-
LOC77_RS18645	narK	3712753..3713943 (-)	1191	WP_230639669.1	nitrate transporter NarK	-
LOC77_RS18650	argS	3714078..3715748 (-)	1671	WP_025853601.1	arginine--tRNA ligase	-
LOC77_RS18655	-	3715745..3716173 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
LOC77_RS18660	rapF	3716465..3717610 (+)	1146	WP_171463628.1	tetratricopeptide repeat protein	Regulator
LOC77_RS18665	-	3717594..3717713 (+)	120	WP_015387559.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
LOC77_RS18670	-	3717912..3718115 (+)	204	WP_003151064.1	helix-turn-helix transcriptional regulator	-
LOC77_RS18675	-	3718129..3718332 (+)	204	WP_003151062.1	hypothetical protein	-
LOC77_RS18685	-	3718739..3719020 (+)	282	WP_014306021.1	hypothetical protein	-
LOC77_RS18690	-	3719064..3719576 (+)	513	WP_230639670.1	stage II sporulation protein M	-
LOC77_RS18695	-	3720167..3720385 (-)	219	WP_003151056.1	helix-turn-helix transcriptional regulator	-
LOC77_RS18700	speB	3720555..3721427 (-)	873	WP_003151054.1	agmatinase	-
LOC77_RS18705	speE	3721487..3722317 (-)	831	WP_003151052.1	spermidine synthase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45569.76 Da
• Isoelectric Point: 4.6057

>NTDB_id=632071 LOC77_RS18660 WP_171463628.1 3716465..3717610(+) (rapF) [Bacillus velezensis strain B-001]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLVDIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQGNYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKMMYADLEDFALDVAKYYHERENFEKAAAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=632071 LOC77_RS18660 WP_171463628.1 3716465..3717610(+) (rapF) [Bacillus velezensis strain B-001]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTATTTGCGAAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGTGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTGGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCTTT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGGAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATTATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAATATGAATTTTTAGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAAATGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAGAATTTCGAGAAGGCTGCTGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	78.74	100	0.787
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	99.738	0.567