Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LOC77_RS13200 Genome accession   NZ_CP087957
Coordinates   2654705..2655472 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain B-001     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2649705..2660472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC77_RS13180 - 2649907..2650719 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  LOC77_RS13185 ccpN 2650745..2651383 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  LOC77_RS13190 glyS 2651484..2653523 (-) 2040 WP_003152986.1 glycine--tRNA ligase subunit beta -
  LOC77_RS13195 glyQ 2653516..2654403 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  LOC77_RS13200 recO 2654705..2655472 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  LOC77_RS13205 - 2655509..2655652 (-) 144 WP_007408286.1 YqzL family protein -
  LOC77_RS13210 era 2655808..2656713 (-) 906 WP_003152978.1 GTPase Era -
  LOC77_RS13215 - 2656694..2657104 (-) 411 WP_003152976.1 cytidine deaminase -
  LOC77_RS13220 - 2657228..2657602 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  LOC77_RS13225 ybeY 2657583..2658056 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  LOC77_RS13230 - 2658057..2660189 (-) 2133 WP_230639579.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=632048 LOC77_RS13200 WP_003152982.1 2654705..2655472(-) (recO) [Bacillus velezensis strain B-001]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=632048 LOC77_RS13200 WP_003152982.1 2654705..2655472(-) (recO) [Bacillus velezensis strain B-001]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATTGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894