Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LOC77_RS12690 Genome accession   NZ_CP087957
Coordinates   2568147..2568947 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain B-001     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2563147..2573947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC77_RS12660 - 2563697..2564329 (+) 633 WP_230639574.1 DUF1232 domain-containing protein -
  LOC77_RS12665 - 2564620..2564757 (+) 138 WP_014470646.1 hypothetical protein -
  LOC77_RS12670 - 2564851..2565969 (+) 1119 WP_088037465.1 NADH-dependent flavin oxidoreductase -
  LOC77_RS12675 - 2566095..2566307 (+) 213 WP_003153183.1 spore germination protein -
  LOC77_RS12680 - 2566433..2566645 (+) 213 WP_014305392.1 spore germination protein -
  LOC77_RS12685 alr 2566820..2568001 (+) 1182 WP_230639575.1 alanine racemase -
  LOC77_RS12690 spo0A 2568147..2568947 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  LOC77_RS12695 spoIVB 2569228..2570508 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  LOC77_RS12700 recN 2570671..2572401 (-) 1731 WP_003153174.1 DNA repair protein RecN Machinery gene
  LOC77_RS12705 ahrC 2572433..2572882 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  LOC77_RS12710 - 2572979..2573824 (-) 846 WP_015388017.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=632038 LOC77_RS12690 WP_003153177.1 2568147..2568947(-) (spo0A) [Bacillus velezensis strain B-001]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=632038 LOC77_RS12690 WP_003153177.1 2568147..2568947(-) (spo0A) [Bacillus velezensis strain B-001]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGTGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCATCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCCC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCAGAGTTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97