Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LOC77_RS11625 Genome accession   NZ_CP087957
Coordinates   2322410..2323018 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain B-001     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2317410..2328018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC77_RS11585 - 2318469..2318975 (-) 507 WP_230639550.1 PTS glucose transporter subunit IIA -
  LOC77_RS11590 - 2319114..2319527 (+) 414 WP_003153535.1 hypothetical protein -
  LOC77_RS11595 - 2319557..2319985 (-) 429 WP_230639552.1 YppG family protein -
  LOC77_RS11600 - 2320172..2320354 (+) 183 WP_003153532.1 YppF family protein -
  LOC77_RS11605 - 2320393..2320761 (-) 369 WP_230639553.1 YppE family protein -
  LOC77_RS11610 - 2320807..2321052 (-) 246 WP_003153527.1 DUF5446 family protein -
  LOC77_RS11615 sspM 2321258..2321362 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  LOC77_RS11620 - 2321406..2322368 (-) 963 WP_014305287.1 DUF2515 domain-containing protein -
  LOC77_RS11625 recU 2322410..2323018 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  LOC77_RS11630 - 2323057..2325840 (+) 2784 WP_230639554.1 PBP1A family penicillin-binding protein -
  LOC77_RS11635 - 2325918..2326409 (-) 492 WP_230639555.1 YpoC family protein -
  LOC77_RS11640 nth 2326406..2327065 (-) 660 WP_015388079.1 endonuclease III -
  LOC77_RS11645 dnaD 2327084..2327782 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=632037 LOC77_RS11625 WP_003153521.1 2322410..2323018(+) (recU) [Bacillus velezensis strain B-001]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=632037 LOC77_RS11625 WP_003153521.1 2322410..2323018(+) (recU) [Bacillus velezensis strain B-001]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATCGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896