Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LOC77_RS07270 Genome accession   NZ_CP087957
Coordinates   1383339..1383623 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain B-001     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1378339..1388623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC77_RS07250 - 1379586..1380494 (+) 909 WP_003154561.1 ketopantoate reductase family protein -
  LOC77_RS07255 - 1380524..1381756 (-) 1233 WP_003154560.1 aminopeptidase -
  LOC77_RS07260 - 1381857..1381991 (-) 135 WP_003154559.1 protein YkpC -
  LOC77_RS07265 mreBH 1382063..1383070 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  LOC77_RS07270 abrB 1383339..1383623 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LOC77_RS07275 - 1383796..1385100 (+) 1305 WP_003154556.1 ATP-binding protein -
  LOC77_RS07280 - 1385102..1385929 (+) 828 WP_230639832.1 gamma-glutamylcyclotransferase -
  LOC77_RS07285 ktrC 1385970..1386635 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  LOC77_RS07290 ade 1386784..1388517 (+) 1734 WP_003154552.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=632031 LOC77_RS07270 WP_003154557.1 1383339..1383623(+) (abrB) [Bacillus velezensis strain B-001]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=632031 LOC77_RS07270 WP_003154557.1 1383339..1383623(+) (abrB) [Bacillus velezensis strain B-001]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543