Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   LOC77_RS07160 Genome accession   NZ_CP087957
Coordinates   1362844..1363440 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain B-001     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1357844..1368440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC77_RS07130 - 1358058..1358513 (+) 456 WP_044053160.1 flavodoxin -
  LOC77_RS07135 dapD 1358595..1359305 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  LOC77_RS07140 - 1359376..1360500 (+) 1125 WP_014304923.1 N-acetyldiaminopimelate deacetylase -
  LOC77_RS07145 - 1360561..1360806 (+) 246 WP_003154596.1 YkuS family protein -
  LOC77_RS07150 - 1360840..1361646 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  LOC77_RS07155 - 1361934..1362392 (+) 459 WP_014304924.1 TlpA disulfide reductase family protein -
  LOC77_RS07160 rok 1362844..1363440 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  LOC77_RS07165 - 1363461..1364453 (-) 993 WP_230639829.1 sporulation protein -
  LOC77_RS07170 - 1364599..1365201 (+) 603 WP_015388303.1 molybdenum cofactor guanylyltransferase -
  LOC77_RS07175 - 1365253..1366272 (+) 1020 WP_032874747.1 molybdopterin-synthase adenylyltransferase MoeB -
  LOC77_RS07180 glp 1366290..1367582 (+) 1293 WP_230639830.1 gephyrin-like molybdotransferase Glp -
  LOC77_RS07185 mobB 1367543..1368064 (+) 522 WP_046559554.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=632030 LOC77_RS07160 WP_003154591.1 1362844..1363440(+) (rok) [Bacillus velezensis strain B-001]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=632030 LOC77_RS07160 WP_003154591.1 1362844..1363440(+) (rok) [Bacillus velezensis strain B-001]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843