Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LOC77_RS07060 Genome accession   NZ_CP087957
Coordinates   1346983..1347447 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain B-001     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1341983..1352447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOC77_RS07040 - 1342463..1344283 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  LOC77_RS07045 - 1344259..1345478 (-) 1220 Protein_1327 aminotransferase A -
  LOC77_RS07050 - 1345679..1345840 (-) 162 WP_007409608.1 hypothetical protein -
  LOC77_RS07055 cheV 1346029..1346940 (+) 912 WP_014304917.1 chemotaxis protein CheV -
  LOC77_RS07060 kre 1346983..1347447 (-) 465 WP_003154622.1 YkyB family protein Regulator
  LOC77_RS07065 - 1347570..1348862 (-) 1293 WP_043867050.1 MFS transporter -
  LOC77_RS07070 - 1348938..1349432 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  LOC77_RS07075 - 1349507..1350370 (-) 864 WP_025851492.1 metallophosphoesterase -
  LOC77_RS07080 fadH 1350514..1351278 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  LOC77_RS07085 - 1351389..1351934 (+) 546 Protein_1335 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=632029 LOC77_RS07060 WP_003154622.1 1346983..1347447(-) (kre) [Bacillus velezensis strain B-001]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=632029 LOC77_RS07060 WP_003154622.1 1346983..1347447(-) (kre) [Bacillus velezensis strain B-001]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929