Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   U471_RS16710 Genome accession   NC_022653
Coordinates   3471027..3471368 (-) Length   113 a.a.
NCBI ID   WP_012118637.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens CC178     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3466027..3476368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS16695 (U471_34870) - 3466295..3469069 (+) 2775 WP_012118635.1 DEAD/DEAH box helicase -
  U471_RS16700 (U471_34880) - 3469182..3470039 (-) 858 WP_012118636.1 Cof-type HAD-IIB family hydrolase -
  U471_RS16705 (U471_34890) - 3470036..3470818 (-) 783 WP_003151250.1 DeoR/GlpR family DNA-binding transcription regulator -
  U471_RS16710 (U471_34900) ssbB 3471027..3471368 (-) 342 WP_012118637.1 single-stranded DNA-binding protein Machinery gene
  U471_RS16715 (U471_34910) - 3471466..3471819 (-) 354 WP_003151247.1 hypothetical protein -
  U471_RS16720 (U471_34920) - 3471992..3472402 (+) 411 WP_012118638.1 YwpF-like family protein -
  U471_RS16725 (U471_34930) mscL 3472450..3472845 (-) 396 WP_003151243.1 large conductance mechanosensitive channel protein MscL -
  U471_RS16730 (U471_34940) fabZ 3472901..3473326 (-) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  U471_RS16735 (U471_34950) - 3473522..3474586 (+) 1065 WP_012118639.1 tetratricopeptide repeat protein -
  U471_RS16740 (U471_34960) - 3474604..3475425 (-) 822 WP_012118640.1 flagellar hook-basal body protein -
  U471_RS16745 (U471_34970) - 3475450..3476247 (-) 798 WP_007614310.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12617.47 Da        Isoelectric Point: 9.0994

>NTDB_id=63197 U471_RS16710 WP_012118637.1 3471027..3471368(-) (ssbB) [Bacillus amyloliquefaciens CC178]
MFNHVMLVGRLTKDPELRFTAAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKQKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=63197 U471_RS16710 WP_012118637.1 3471027..3471368(-) (ssbB) [Bacillus amyloliquefaciens CC178]
TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCTCCGTTTTACAGCAGCGGGCATTCCCGTCGC
ACATATTACGTTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCGTCAACTGTACCATCT
GGAGAAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACA
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.106

100

0.761
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

93.805

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

93.805

0.487
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.903

100

0.469
  ssbA Streptococcus mutans UA159

42.478

100

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae D39

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae R6

40.708

100

0.407
  ssbB/cilA Streptococcus mitis SK321

40.708

100

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

37.5

99.115

0.372

Multiple sequence alignment