Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G163CM_RS09215 Genome accession   NZ_CP087880
Coordinates   1970240..1970863 (-) Length   207 a.a.
NCBI ID   WP_231827803.1    Uniprot ID   -
Organism   Pseudocitrobacter corydidari isolate G163CM     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1965240..1975863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G163CM_RS09200 (G163CM_18340) helD 1965477..1967531 (-) 2055 WP_231827801.1 DNA helicase IV -
  G163CM_RS09205 (G163CM_18350) - 1967652..1968098 (+) 447 WP_231827802.1 YccF domain-containing protein -
  G163CM_RS09210 (G163CM_18360) yccS 1968117..1970243 (+) 2127 WP_015965050.1 YccS family putative transporter -
  G163CM_RS09215 (G163CM_18370) sxy/tfoX 1970240..1970863 (-) 624 WP_231827803.1 TfoX/Sxy family DNA transformation protein Regulator
  G163CM_RS09220 (G163CM_18380) sulA 1971072..1971581 (+) 510 WP_231827804.1 SOS-induced cell division inhibitor SulA -
  G163CM_RS09225 (G163CM_18390) ompA 1971933..1972982 (+) 1050 WP_231827805.1 porin OmpA -
  G163CM_RS09230 (G163CM_18400) matP 1973051..1973503 (-) 453 WP_015965054.1 macrodomain Ter protein MatP -
  G163CM_RS09235 (G163CM_18410) - 1973687..1975450 (+) 1764 WP_231827806.1 AAA family ATPase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23495.37 Da        Isoelectric Point: 10.4245

>NTDB_id=631969 G163CM_RS09215 WP_231827803.1 1970240..1970863(-) (sxy/tfoX) [Pseudocitrobacter corydidari isolate G163CM]
MKKISYKRIYQSQEYLAPLGVVRSRSLFGGYSLSVNNTVFAMVSEGELYLRACEDTAVYQRKVKTPLLTLKKRGGPLQLN
YFRVDEALWQNQKMLLRLSKYSLKDAQREKKGRLVSQRLKDLPNLSFHMELLMAEAGICNVADLQRLGAKDAWAKLRRLR
ENLSVGFILSLEGALTGVHAAAVPLRRRDELIDWASALSIHTPAQTD

Nucleotide


Download         Length: 624 bp        

>NTDB_id=631969 G163CM_RS09215 WP_231827803.1 1970240..1970863(-) (sxy/tfoX) [Pseudocitrobacter corydidari isolate G163CM]
ATGAAAAAAATATCTTATAAACGGATTTATCAATCCCAGGAATACCTCGCACCACTGGGCGTCGTGCGCTCCCGTTCGCT
GTTTGGCGGTTATAGTCTTTCGGTTAACAACACCGTTTTCGCCATGGTCTCAGAAGGGGAACTTTATCTTCGGGCCTGTG
AAGATACAGCGGTGTATCAACGCAAAGTGAAAACGCCGCTTCTGACGCTTAAAAAGCGAGGTGGCCCGCTTCAACTTAAC
TATTTCCGCGTGGATGAGGCGCTATGGCAGAACCAAAAAATGTTGCTGCGATTAAGTAAGTATTCGTTAAAAGATGCGCA
ACGGGAGAAAAAAGGGCGTCTGGTATCGCAACGATTAAAGGATCTGCCAAATCTTTCCTTTCATATGGAACTGCTTATGG
CGGAGGCCGGAATATGTAATGTGGCAGATTTGCAACGACTGGGCGCAAAAGACGCATGGGCGAAATTACGTCGGCTACGC
GAGAATTTGAGCGTGGGGTTTATTTTATCGCTCGAAGGGGCATTGACGGGCGTTCATGCCGCAGCCGTTCCGCTGCGGCG
GCGCGATGAGTTAATTGACTGGGCAAGCGCGCTGAGTATCCACACGCCCGCCCAGACCGATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

55.61

99.034

0.551