Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LP089_RS05695 Genome accession   NZ_CP087863
Coordinates   1175890..1177296 (-) Length   468 a.a.
NCBI ID   WP_264690178.1    Uniprot ID   -
Organism   Moraxella bovis strain SAM57926     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1170890..1182296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP089_RS05675 (LP089_05640) - 1172404..1173132 (-) 729 WP_264676850.1 ATP-binding cassette domain-containing protein -
  LP089_RS05680 (LP089_05645) - 1173164..1173640 (-) 477 WP_115369845.1 hypothetical protein -
  LP089_RS05685 (LP089_05650) - 1173730..1174713 (-) 984 WP_264676849.1 ABC transporter substrate-binding protein -
  LP089_RS05690 (LP089_05655) - 1175087..1175854 (-) 768 WP_264676848.1 ABC transporter permease -
  LP089_RS05695 (LP089_05660) radA 1175890..1177296 (-) 1407 WP_264690178.1 DNA repair protein RadA Machinery gene
  LP089_RS05700 (LP089_05665) sodA 1177932..1178546 (+) 615 WP_264676847.1 superoxide dismutase [Mn] -
  LP089_RS05705 (LP089_05670) - 1178895..1179371 (-) 477 WP_264676846.1 cytochrome c -
  LP089_RS05710 (LP089_05675) hemF 1179562..1180203 (-) 642 Protein_1106 oxygen-dependent coproporphyrinogen oxidase -
  LP089_RS05715 (LP089_05680) - 1180540..1181850 (-) 1311 WP_115369849.1 trypsin-like peptidase domain-containing protein -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 49752.30 Da        Isoelectric Point: 7.3452

>NTDB_id=631929 LP089_RS05695 WP_264690178.1 1175890..1177296(-) (radA) [Moraxella bovis strain SAM57926]
MAKKSSYVCQSCGANYGKWSGQCADCGEWNTLTEAPNVAMPHHKKTTTKSAPKTANYAGDSSGVMTLANVGFSLETRMPT
GLGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMASSDSLAGSALYITGEESLSQVAMRAVRLGLPTDRLRVLA
ETNVETICMALTAEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGVLAGPRVLEH
MVDTVLYFEGESDSRFRMIRAVKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQ
ALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIYTSGQDVYVNVVGGVKVMETGSDLAVLIACASSIKEKPLPARLCV
FGEVGLSGEIRPVPNGQERLKEAMKHGFTYAIIPKANAPKVGDKNFANINIIAVDRLDDALIRAFELA

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=631929 LP089_RS05695 WP_264690178.1 1175890..1177296(-) (radA) [Moraxella bovis strain SAM57926]
ATGGCAAAAAAATCCTCTTACGTCTGCCAATCCTGCGGAGCCAATTACGGCAAATGGTCAGGGCAATGTGCCGACTGTGG
CGAATGGAATACGCTCACCGAAGCCCCCAATGTCGCCATGCCCCACCACAAAAAAACCACCACCAAATCCGCCCCGAAAA
CCGCCAACTATGCAGGCGACAGCTCTGGGGTCATGACCCTTGCCAATGTCGGCTTTTCGCTAGAAACCCGTATGCCCACA
GGCTTGGGCGAATTTGACCGTGTGCTTGGCGGTGGGCTTGTGGCAGGCTCGGTGGTGCTGATTGGGGGCGACCCGGGTAT
CGGCAAATCCACAATCCTTTTGCAGACCGCCATCAACATGGCAAGTAGCGACTCTCTGGCTGGCTCGGCTCTATATATCA
CAGGCGAAGAGAGCCTGTCGCAGGTTGCCATGCGTGCGGTGCGACTAGGGCTACCGACCGACCGCCTAAGGGTGCTTGCC
GAGACCAACGTTGAGACCATTTGCATGGCTCTGACCGCCGAACAGCCTGCCATTGCCGTCATTGACTCTATTCAGACGCT
CTTTACCGAAGCCATACAGTCCGCCCCAGGGGGCGTCGCCCAAATCCGTGAATCCGCCGCCGTCTTGACACGCTATGCCA
AGCAGACAGGCACGGCACTTTTTTTGGTGGGACACGTTACCAAAGAAGGAGTGTTGGCAGGGCCTCGTGTGCTAGAACAC
ATGGTGGATACGGTGCTGTATTTTGAAGGCGAGTCCGATAGCCGATTTAGAATGATTCGTGCGGTCAAAAACCGTTTTGG
GGCGGTCAATGAACTGGGTATTTTTGGCATGACTGATACAGGTTTAAAGGAAGTTGCCAATCCGTCCGCCATTTTTTTGA
GTCGATATGACAAGCCCATTGCAGGGTCGGTGGTCATGGTCAGCCGTGAAGGCACACGTCCTCTGCTTGTGGAAGTGCAA
GCGTTGGTGGACGATTCGCAAGGTCAGCCCAGACGTATGGCGTTGGGGCTTGATTATCAACGCCTATCCATGCTTCTTGC
GGTCATGCACCGTCATGGCGGTATCTACACGAGCGGTCAGGACGTGTATGTCAATGTCGTGGGCGGGGTCAAGGTCATGG
AGACAGGCTCGGATTTGGCGGTGCTGATTGCCTGTGCGTCTAGCATTAAGGAAAAACCGCTACCTGCACGGCTGTGCGTA
TTTGGTGAAGTGGGACTATCGGGGGAGATTCGCCCTGTGCCAAACGGTCAAGAACGCCTAAAAGAAGCGATGAAACACGG
CTTTACCTACGCCATTATCCCCAAAGCCAACGCCCCCAAAGTAGGCGATAAAAATTTTGCCAATATCAATATCATTGCCG
TGGATAGGCTAGATGATGCGTTGATACGGGCGTTTGAGCTTGCGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-230)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

Subunit ChlI of Mg-chelatase (ChlI)

(361-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.469

100

0.498
  radA Streptococcus mitis NCTC 12261

45.259

99.145

0.449
  radA Streptococcus mitis SK321

45.259

99.145

0.449
  radA Streptococcus pneumoniae Rx1

45.259

99.145

0.449
  radA Streptococcus pneumoniae D39

45.259

99.145

0.449
  radA Streptococcus pneumoniae R6

45.259

99.145

0.449
  radA Streptococcus pneumoniae TIGR4

45.259

99.145

0.449