Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   N5855_RS12390 Genome accession   NZ_CP104629
Coordinates   2598433..2599425 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain AHM21C2872I     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2593433..2604425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5855_RS12365 (N5855_12350) pphB 2594795..2595451 (+) 657 WP_040234893.1 protein-serine/threonine phosphatase -
  N5855_RS12370 (N5855_12355) - 2595492..2595728 (-) 237 WP_000562982.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  N5855_RS12375 (N5855_12360) - 2595739..2597166 (-) 1428 WP_000863205.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  N5855_RS12380 (N5855_12365) - 2597166..2597759 (-) 594 WP_040234895.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  N5855_RS12385 (N5855_12370) - 2597906..2598313 (+) 408 WP_001208062.1 MarR family transcriptional regulator -
  N5855_RS12390 (N5855_12375) rpoS 2598433..2599425 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  N5855_RS12395 (N5855_12380) nlpD 2599488..2600582 (-) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  N5855_RS12400 (N5855_12385) pcm 2600767..2601393 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  N5855_RS12405 (N5855_12390) surE 2601387..2602148 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  N5855_RS12410 (N5855_12395) truD 2602129..2603178 (-) 1050 WP_000568924.1 tRNA pseudouridine(13) synthase TruD -
  N5855_RS12415 (N5855_12400) ispF 2603175..2603654 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  N5855_RS12420 (N5855_12405) ispD 2603654..2604364 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=631890 N5855_RS12390 WP_000081550.1 2598433..2599425(-) (rpoS) [Escherichia coli strain AHM21C2872I]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=631890 N5855_RS12390 WP_000081550.1 2598433..2599425(-) (rpoS) [Escherichia coli strain AHM21C2872I]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715