Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N5855_RS00950 Genome accession   NZ_CP104629
Coordinates   213024..213629 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain AHM21C2872I     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 208024..218629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5855_RS00915 - 208578..208676 (+) 99 Protein_181 hypothetical protein -
  N5855_RS00920 (N5855_00915) rsmS 208729..208890 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  N5855_RS00925 (N5855_00920) priC 208904..209431 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  N5855_RS00930 (N5855_00925) ybaN 209501..209878 (+) 378 WP_001188905.1 DUF454 family protein -
  N5855_RS00935 (N5855_00930) apt 210031..210582 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  N5855_RS00940 (N5855_00935) dnaX 210711..212642 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  N5855_RS00945 (N5855_00940) ybaB 212695..213024 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  N5855_RS00950 (N5855_00945) recR 213024..213629 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  N5855_RS00955 (N5855_00950) htpG 213739..215613 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  N5855_RS00960 (N5855_00955) adk 215794..216438 (+) 645 WP_001220233.1 adenylate kinase -
  N5855_RS00965 (N5855_00960) hemH 216674..217636 (+) 963 WP_001250088.1 ferrochelatase -
  N5855_RS00970 (N5855_00965) aes 217633..218592 (-) 960 WP_000801832.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=631858 N5855_RS00950 WP_001195025.1 213024..213629(+) (recR) [Escherichia coli strain AHM21C2872I]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=631858 N5855_RS00950 WP_001195025.1 213024..213629(+) (recR) [Escherichia coli strain AHM21C2872I]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443