Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LP113_RS07905 Genome accession   NZ_CP087854
Coordinates   1605981..1607387 (+) Length   468 a.a.
NCBI ID   WP_078273299.1    Uniprot ID   A0A1T0A8Y3
Organism   Moraxella bovis strain SAM57990     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1600981..1612387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP113_RS07885 (LP113_07820) - 1601427..1602737 (+) 1311 WP_115369849.1 S1C family serine protease -
  LP113_RS07890 (LP113_07825) hemF 1603074..1603715 (+) 642 Protein_1549 oxygen-dependent coproporphyrinogen oxidase -
  LP113_RS07895 (LP113_07830) - 1603906..1604382 (+) 477 WP_264676846.1 c-type cytochrome -
  LP113_RS07900 (LP113_07835) sodA 1604731..1605345 (-) 615 WP_264676847.1 superoxide dismutase [Mn] -
  LP113_RS07905 (LP113_07840) radA 1605981..1607387 (+) 1407 WP_078273299.1 DNA repair protein RadA Machinery gene
  LP113_RS07910 (LP113_07845) - 1607423..1608190 (+) 768 WP_264676848.1 ABC transporter permease -
  LP113_RS07915 (LP113_07850) - 1608564..1609547 (+) 984 WP_264676849.1 ABC transporter substrate-binding protein -
  LP113_RS07920 (LP113_07855) - 1609637..1610113 (+) 477 WP_115369845.1 hypothetical protein -
  LP113_RS07925 (LP113_07860) - 1610145..1610873 (+) 729 WP_264676850.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 49724.25 Da        Isoelectric Point: 7.3452

>NTDB_id=631846 LP113_RS07905 WP_078273299.1 1605981..1607387(+) (radA) [Moraxella bovis strain SAM57990]
MAKKSSYVCQSCGANYGKWSGQCADCGEWNTLTEAPNVAMPHHKKTTTKSAPKTANYAGDSSGVMTLANVGFSLETRMPT
GLGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMASSDSLAGSALYITGEESLSQVAMRAVRLGLPTDRLRVLA
ETNVETICMALTAEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEH
MVDTVLYFEGESDSRFRMIRAVKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQ
ALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIYTSGQDVYVNVVGGVKVMETGSDLAVLIACASSIKEKPLPARLCV
FGEVGLSGEIRPVPNGQERLKEAMKHGFTYAIIPKANAPKVGDKNFANINIIAVDRLDDALIRAFELA

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=631846 LP113_RS07905 WP_078273299.1 1605981..1607387(+) (radA) [Moraxella bovis strain SAM57990]
ATGGCAAAAAAATCCTCTTACGTCTGCCAATCCTGCGGAGCCAATTACGGCAAATGGTCAGGGCAATGTGCCGACTGTGG
CGAATGGAATACGCTCACCGAAGCCCCCAATGTCGCCATGCCCCACCACAAAAAAACCACCACCAAATCCGCCCCGAAAA
CCGCCAACTATGCAGGCGACAGCTCTGGGGTCATGACCCTTGCCAATGTCGGCTTTTCGCTAGAAACCCGTATGCCCACA
GGCTTGGGCGAATTTGACCGTGTGCTTGGCGGTGGGCTTGTGGCAGGCTCGGTGGTGCTGATTGGGGGCGACCCGGGTAT
CGGCAAATCCACAATCCTTTTGCAGACCGCCATCAACATGGCAAGTAGCGACTCTCTGGCTGGCTCGGCTCTATATATCA
CAGGCGAAGAGAGCCTGTCGCAGGTTGCCATGCGTGCGGTGCGACTAGGGCTACCGACCGACCGCCTAAGGGTGCTTGCC
GAGACCAACGTTGAGACCATTTGCATGGCTCTGACCGCCGAACAGCCTGCCATTGCCGTCATTGACTCTATTCAGACGCT
CTTTACCGAAGCCATACAGTCCGCCCCAGGGGGCGTCGCCCAAATCCGTGAATCCGCCGCCGTCTTGACACGCTATGCCA
AGCAGACAGGCACGGCACTTTTTTTGGTGGGACACGTTACCAAAGAAGGAGCGTTGGCAGGGCCTCGTGTGCTAGAACAC
ATGGTGGATACGGTGCTGTATTTTGAAGGCGAGTCCGATAGCCGATTTAGAATGATTCGTGCGGTCAAAAACCGTTTTGG
GGCGGTCAATGAACTGGGTATTTTTGGCATGACTGATACAGGTTTAAAGGAAGTTGCCAATCCGTCCGCCATTTTTTTGA
GTCGATATGACAAGCCCATTGCAGGGTCGGTGGTCATGGTCAGCCGTGAAGGCACACGTCCTCTGCTTGTGGAAGTGCAA
GCGTTGGTGGACGATTCGCAAGGTCAGCCCAGACGTATGGCGTTGGGGCTTGATTATCAACGCCTATCCATGCTTCTTGC
GGTCATGCACCGTCATGGCGGTATCTACACGAGCGGTCAGGACGTGTATGTCAATGTCGTGGGCGGGGTCAAGGTCATGG
AGACAGGCTCGGATTTGGCGGTGCTGATTGCCTGTGCGTCTAGCATTAAGGAAAAACCGCTACCTGCACGGCTGTGCGTA
TTTGGTGAAGTGGGACTATCGGGGGAGATTCGCCCTGTGCCAAACGGTCAAGAACGCCTAAAAGAAGCGATGAAACACGG
CTTTACCTACGCCATTATCCCCAAAGCCAACGCCCCCAAAGTAGGCGATAAAAATTTTGCCAATATCAATATCATTGCCG
TGGATAGGCTAGATGATGCGTTGATACGGGCGTTTGAGCTTGCGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-230)

Subunit ChlI of Mg-chelatase (ChlI)

(361-437)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T0A8Y3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.469

100

0.498
  radA Streptococcus mitis NCTC 12261

45.259

99.145

0.449
  radA Streptococcus mitis SK321

45.259

99.145

0.449
  radA Streptococcus pneumoniae Rx1

45.259

99.145

0.449
  radA Streptococcus pneumoniae D39

45.259

99.145

0.449
  radA Streptococcus pneumoniae R6

45.259

99.145

0.449
  radA Streptococcus pneumoniae TIGR4

45.259

99.145

0.449