Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   U471_RS12505 Genome accession   NC_022653
Coordinates   2625953..2626705 (-) Length   250 a.a.
NCBI ID   WP_012118107.1    Uniprot ID   A7Z796
Organism   Bacillus amyloliquefaciens CC178     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2620953..2631705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U471_RS12480 (U471_26020) mreC 2621389..2622252 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  U471_RS12485 (U471_26030) mreB 2622283..2623296 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  U471_RS12490 (U471_26040) radC 2623388..2624083 (-) 696 WP_007408165.1 RadC family protein -
  U471_RS12495 (U471_26050) - 2624115..2624684 (-) 570 WP_012118105.1 Maf family protein -
  U471_RS12500 (U471_26060) - 2624825..2625826 (-) 1002 WP_012118106.1 SPOR domain-containing protein -
  U471_RS12505 (U471_26070) comC 2625953..2626705 (-) 753 WP_012118107.1 prepilin peptidase Machinery gene
  U471_RS12510 (U471_26080) - 2626845..2628137 (-) 1293 WP_012118108.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  U471_RS12515 (U471_26090) - 2628196..2630838 (-) 2643 WP_012118109.1 valine--tRNA ligase -
  U471_RS12520 (U471_26110) - 2631291..2631482 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27219.94 Da        Isoelectric Point: 9.4293

>NTDB_id=63183 U471_RS12505 WP_012118107.1 2625953..2626705(-) (comC) [Bacillus amyloliquefaciens CC178]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=63183 U471_RS12505 WP_012118107.1 2625953..2626705(-) (comC) [Bacillus amyloliquefaciens CC178]
GTGCTTTTGATTCTGTTTTTTCTAGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GGCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTAAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment