Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N5859_RS16490 Genome accession   NZ_CP104618
Coordinates   3374032..3374637 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain AHM9C68I     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3369032..3379637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5859_RS16470 (N5859_16400) aes 3369069..3370028 (+) 960 WP_000801849.1 acetyl esterase -
  N5859_RS16475 (N5859_16405) hemH 3370025..3370987 (-) 963 WP_089075063.1 ferrochelatase -
  N5859_RS16480 (N5859_16410) adk 3371223..3371867 (-) 645 WP_001220233.1 adenylate kinase -
  N5859_RS16485 (N5859_16415) htpG 3372048..3373922 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  N5859_RS16490 (N5859_16420) recR 3374032..3374637 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  N5859_RS16495 (N5859_16425) ybaB 3374637..3374966 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  N5859_RS16500 (N5859_16430) dnaX 3375019..3376950 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  N5859_RS16505 (N5859_16435) apt 3377079..3377630 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  N5859_RS16510 (N5859_16440) ybaN 3377783..3378160 (-) 378 WP_001188905.1 DUF454 family protein -
  N5859_RS16515 (N5859_16445) priC 3378230..3378757 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  N5859_RS16520 (N5859_16450) rsmS 3378771..3378932 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=631823 N5859_RS16490 WP_001195025.1 3374032..3374637(-) (recR) [Escherichia coli strain AHM9C68I]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=631823 N5859_RS16490 WP_001195025.1 3374032..3374637(-) (recR) [Escherichia coli strain AHM9C68I]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443