Detailed information NTG0631790

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N5859_RS04975
• Genome accession: NZ_CP104618
• Coordinates: 1024476..1025468 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AHM9C68I
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1019476..1030468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N5859_RS04945 (N5859_04920)	ispD	1019537..1020247 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
N5859_RS04950 (N5859_04925)	ispF	1020247..1020726 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N5859_RS04955 (N5859_04930)	truD	1020723..1021772 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
N5859_RS04960 (N5859_04935)	surE	1021753..1022514 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
N5859_RS04965 (N5859_04940)	pcm	1022508..1023134 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
N5859_RS04970 (N5859_04945)	nlpD	1023319..1024413 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
N5859_RS04975 (N5859_04950)	rpoS	1024476..1025468 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
N5859_RS04980 (N5859_04955)	ygbN	1025562..1026926 (-)	1365	WP_049254918.1	GntP family transporter	-
N5859_RS04985 (N5859_04960)	ygbM	1027015..1027791 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
N5859_RS04990 (N5859_04965)	ygbL	1027796..1028434 (-)	639	WP_001278994.1	aldolase	-
N5859_RS04995 (N5859_04970)	otnK	1028431..1029693 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=631790 N5859_RS04975 WP_000081550.1 1024476..1025468(+) (rpoS) [Escherichia coli strain AHM9C68I]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=631790 N5859_RS04975 WP_000081550.1 1024476..1025468(+) (rpoS) [Escherichia coli strain AHM9C68I]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715