Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LP092_RS06670 Genome accession   NZ_CP087830
Coordinates   1261226..1262632 (-) Length   468 a.a.
NCBI ID   WP_112742212.1    Uniprot ID   -
Organism   Moraxella bovis strain SAM102599     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1256226..1267632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP092_RS06650 (LP092_06595) - 1257637..1258365 (-) 729 WP_078273303.1 ATP-binding cassette domain-containing protein -
  LP092_RS06655 (LP092_06600) - 1258397..1258873 (-) 477 WP_264676266.1 hypothetical protein -
  LP092_RS06660 (LP092_06605) - 1258963..1260000 (-) 1038 WP_228157811.1 ABC transporter substrate-binding protein -
  LP092_RS06665 (LP092_06610) - 1260423..1261190 (-) 768 WP_078273300.1 ABC transporter permease -
  LP092_RS06670 (LP092_06615) radA 1261226..1262632 (-) 1407 WP_112742212.1 DNA repair protein RadA Machinery gene
  LP092_RS06675 (LP092_06620) sodA 1263268..1263882 (+) 615 WP_029102762.1 superoxide dismutase [Mn] -
  LP092_RS06680 (LP092_06625) - 1264229..1264705 (-) 477 WP_162860379.1 cytochrome c -
  LP092_RS06685 (LP092_06630) hemF 1264896..1265537 (-) 642 Protein_1306 oxygen-dependent coproporphyrinogen oxidase -
  LP092_RS06690 (LP092_06635) - 1265879..1267189 (-) 1311 WP_078273296.1 trypsin-like peptidase domain-containing protein -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 49750.28 Da        Isoelectric Point: 7.3054

>NTDB_id=631712 LP092_RS06670 WP_112742212.1 1261226..1262632(-) (radA) [Moraxella bovis strain SAM102599]
MAKKSSYVCQSCGANYGKWSGQCADCGEWNTLTEAPNVAMPHYKKTTTKSAPKTANYAGDSSGVMTLANVGFSLETRMPT
GLGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMASSDSLAGSALYITGEESLSQVAMRAVRLGLPTDRLRVLA
ETNVETICMALTAEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEH
MVDTVLYFEGESDSRFRMIRAVKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQ
ALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIYTSGQDVYVNVVGGVKVMETGSDLAVLIACASSIKEKPLPARLCV
FGEVGLSGEIRPVPNGQERLKEAMKHGFTYAIIPKANAPKVGDKNFANINIIAVDRLDDALIRAFELA

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=631712 LP092_RS06670 WP_112742212.1 1261226..1262632(-) (radA) [Moraxella bovis strain SAM102599]
ATGGCAAAAAAATCCTCTTACGTCTGCCAATCCTGCGGAGCCAATTACGGCAAATGGTCAGGGCAATGTGCCGACTGTGG
CGAATGGAACACCCTCACCGAAGCCCCCAACGTCGCCATGCCCCACTACAAAAAAACCACCACCAAATCCGCCCCGAAAA
CCGCCAACTATGCAGGCGACAGCTCTGGGGTCATGACCCTTGCCAATGTCGGCTTTTCGCTAGAAACCCGTATGCCCACA
GGCTTGGGCGAATTTGACCGTGTGCTTGGCGGTGGGCTTGTGGCAGGCTCGGTGGTGCTGATTGGGGGCGACCCGGGTAT
CGGCAAATCCACAATCCTTTTGCAGACCGCCATTAACATGGCAAGTAGCGACTCGCTGGCTGGCTCGGCTCTATATATCA
CAGGCGAAGAGAGCCTGTCGCAGGTTGCCATGCGTGCGGTGCGACTAGGGCTACCGACCGACCGCCTAAGGGTACTTGCC
GAAACCAACGTTGAGACCATTTGCATGGCTCTGACCGCCGAACAGCCTGCCATTGCCGTCATTGACTCCATTCAGACGCT
CTTTACCGAAGCCATACAGTCCGCTCCAGGGGGCGTCGCCCAAATCCGTGAATCCGCCGCCGTCTTGACACGCTATGCCA
AGCAGACAGGCACGGCACTGTTTTTGGTGGGACACGTTACCAAAGAAGGGGCGTTGGCAGGGCCTCGTGTGCTAGAACAC
ATGGTGGATACGGTGCTGTATTTTGAAGGCGAGTCCGATAGCCGATTTAGAATGATTCGCGCGGTCAAAAACCGTTTTGG
GGCGGTCAATGAACTGGGTATTTTTGGCATGACCGATACAGGTTTAAAGGAAGTTGCCAATCCGTCCGCCATTTTTTTGA
GTCGATATGACAAGCCCATTGCAGGGTCGGTGGTCATGGTCAGCCGTGAAGGTACACGTCCTCTGCTTGTGGAAGTGCAA
GCGTTGGTGGACGATTCGCAAGGTCAGCCCAGACGTATGGCGTTGGGGCTTGATTATCAACGCCTATCCATGCTCCTTGC
GGTCATGCACCGTCATGGCGGTATCTACACGAGCGGTCAGGACGTGTATGTCAATGTCGTGGGCGGGGTCAAGGTCATGG
AGACAGGCTCGGATTTGGCGGTGCTGATTGCCTGTGCGTCTAGCATTAAGGAAAAACCGCTACCTGCACGGCTGTGCGTA
TTTGGTGAAGTGGGACTATCGGGGGAGATTCGCCCTGTGCCAAACGGTCAAGAACGCCTAAAAGAAGCGATGAAACACGG
CTTTACCTACGCCATTATCCCCAAAGCCAACGCCCCCAAAGTAGGCGATAAAAATTTTGCCAATATCAATATCATTGCCG
TGGATAGGCTAGATGATGCGTTGATACGGGCGTTTGAGCTTGCGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-230)

Subunit ChlI of Mg-chelatase (ChlI)

(361-437)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.469

100

0.498
  radA Streptococcus mitis NCTC 12261

45.259

99.145

0.449
  radA Streptococcus mitis SK321

45.259

99.145

0.449
  radA Streptococcus pneumoniae Rx1

45.259

99.145

0.449
  radA Streptococcus pneumoniae D39

45.259

99.145

0.449
  radA Streptococcus pneumoniae R6

45.259

99.145

0.449
  radA Streptococcus pneumoniae TIGR4

45.259

99.145

0.449