Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   N5861_RS16850 Genome accession   NZ_CP104598
Coordinates   3475557..3476549 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain AHM8C160RI     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3470557..3481549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5861_RS16825 (N5861_16780) pphB 3471918..3472574 (+) 657 WP_094317701.1 protein-serine/threonine phosphatase -
  N5861_RS16830 (N5861_16785) - 3472615..3472851 (-) 237 WP_094317702.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  N5861_RS16835 (N5861_16790) - 3472862..3474289 (-) 1428 WP_060616471.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  N5861_RS16840 (N5861_16795) - 3474289..3474882 (-) 594 WP_000767722.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  N5861_RS16845 (N5861_16800) - 3475029..3475436 (+) 408 WP_001208062.1 MarR family transcriptional regulator -
  N5861_RS16850 (N5861_16805) rpoS 3475557..3476549 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  N5861_RS16855 (N5861_16810) nlpD 3476612..3477706 (-) 1095 WP_224692580.1 murein hydrolase activator NlpD -
  N5861_RS16860 (N5861_16815) pcm 3477891..3478517 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  N5861_RS16865 (N5861_16820) surE 3478511..3479272 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  N5861_RS16870 (N5861_16825) truD 3479253..3480302 (-) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  N5861_RS16875 (N5861_16830) ispF 3480299..3480778 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  N5861_RS16880 (N5861_16835) ispD 3480778..3481488 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=631657 N5861_RS16850 WP_000081550.1 3475557..3476549(-) (rpoS) [Escherichia coli strain AHM8C160RI]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=631657 N5861_RS16850 WP_000081550.1 3475557..3476549(-) (rpoS) [Escherichia coli strain AHM8C160RI]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715