Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N5861_RS05300 Genome accession   NZ_CP104598
Coordinates   1111061..1111666 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain AHM8C160RI     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1106061..1116666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5861_RS05270 (N5861_05260) rsmS 1106766..1106927 (-) 162 WP_085453540.1 pleiotropic regulatory protein RsmS -
  N5861_RS05275 (N5861_05265) priC 1106941..1107468 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  N5861_RS05280 (N5861_05270) ybaN 1107538..1107915 (+) 378 WP_001188905.1 DUF454 family protein -
  N5861_RS05285 (N5861_05275) apt 1108068..1108619 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  N5861_RS05290 (N5861_05280) dnaX 1108748..1110679 (+) 1932 WP_094317737.1 DNA polymerase III subunit gamma/tau -
  N5861_RS05295 (N5861_05285) ybaB 1110732..1111061 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  N5861_RS05300 (N5861_05290) recR 1111061..1111666 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  N5861_RS05305 (N5861_05295) htpG 1111776..1113650 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  N5861_RS05310 (N5861_05300) adk 1113831..1114475 (+) 645 WP_001220233.1 adenylate kinase -
  N5861_RS05315 (N5861_05305) hemH 1114607..1115569 (+) 963 WP_044867211.1 ferrochelatase -
  N5861_RS05320 (N5861_05310) aes 1115566..1116525 (-) 960 WP_000801812.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=631624 N5861_RS05300 WP_001195025.1 1111061..1111666(+) (recR) [Escherichia coli strain AHM8C160RI]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=631624 N5861_RS05300 WP_001195025.1 1111061..1111666(+) (recR) [Escherichia coli strain AHM8C160RI]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAACG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGGCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCCCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443